Gene detail

Gene detail information of Glyur000032s00003900.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19900.1	5.00E-175	alpha 1,4-glycosyltransferase family protein
NR	XP_003607886.1	0	hypothetical protein MTR_4g084060 [Medicago truncatula]
Swissprot	tr\|P0C8Q4\|Y4990_ARATH	0	Uncharacterized protein At4g19900
trEMBL	tr\|Q2MGS1\|Q2MGS1_MEDTR	0	Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region {ECO:0000313\|EMBL:ABC75355.1}

Sequence

Transcript Sequence

>Glyur000032s00003900.1
TTTCTCGTATCGTTTCAAGTAAACGCGAATGGTTTACATTGGTCTACAAAGTACAAGCACGCAAGCAAAGGCAAAGCAAAGGGAGTTGGCCCGCATAACAGCAAATACGCTGGGAAGGAAAAGAAGAGTGTGAGAGTGAAGACTGAAAGAGGCACGACACGACACGACACGACACGAGACATTGACACAACACGAACGAGAGAGACAGAGTCACAGAGATTGATAGAGTCACCACGACTCAGAAANTGTAGTTATCGATCATTTTGNGTTAAATAATAAATGCTGCGATCCCGGCGGCGGTCTCCTTACGGCGCCTACCTGTGCGCCGTGATCTCCGCCGTCCTCCTCCTCGTCTCCGTCTCACTCCTCTACTCCCGCCTCTCCCTCTCCCACCCTCACCCCTCCAACCACCCTCGCACCTCTCTCCTCTCCGACTCCGACGACCCCGATCTCTCCACCTCCGACCCCATCGACGAGCTCGACATCCTCGAAGACCATGACAGCCACCACCTCCTTCGCCTCAACCCTTCCCCTTACTTCTTCGACCNCCTCTCCGCCTCCATCCGCACCTCCTTCAAAAAAANCCCTTCCCCCATACACCAATGGGACTCCGACGCCGACGCCATCACCGTAACCGTCACCGCCGACGAGTTCTCCCTCGGCTCCNCCCCGGAGGACCGCAGCAAGGCCGCGTTCGGCTCCGACGACGTCCCCCTCGACGACAACATCAGGCGCAAGGCAACGTCCGTCACGGCAATCGAGGACGCGCTTCTTCTAAAAAACTCTCCCCTTAGAGAAGGCTGGGGCGAGTGGTTCGATAAGAAGGGACCCTTCCTCAGAAAAGACAGAATGTTCAAGTCGGGTTTCGATGCTCTGAATCCAGCGAACAATCCCTTGCTTCAAGATCCCGACGGCGTCGGAATCTCCGGTTTCACCAGGGGTGACAGGATCCTCCAGAAGTGGTGGCTGAACGAGTTCAAGAGAGGAGTTCCATTATTCCCCAGCAAATCAGCAACAACTGTCACCAAAGGAGGAACAGAGCGAAGGACCTTGAATCATGATCATGATGATGATCACATCTATGCGGATGGTAATAGTTGGGGATACTTTCCCGGGTTGCCACTTCGTTTGTCCTTCGAAGACTTCATGGATGCGTTCTTCAGGAGGGGCAAATGCGTCATGAGGGTTTTTATGGTTTGGAATTCACCCCCTTGGATGTTCACTGTTCGGCACCAGCGTGGACTCGAGAGTTTGCTCTCTCACCACCCTCGTGCCTGTGTTGTGGTCTTCTCTGAGACAATTGAGCTCGATTTCTTCAAGGATAGCTTTGTCAAGGACGGTTACAAAGTTGCTGTTGTTATGCCAAATCTTGACCAGCTTCTCAAGGATACGCCCGCTTATGTTTTCTCTTCCGTCTGGTTCGAATGGAGAAAGACAAAGTTCTATTCCACTCATTACAGTGAGCTTATCCGTCTTGCAGCTCTCTACAAGTATGGTGGGATCTATCTAGACCCGGATATCATAGTTTTGAAGCCAATTTCTTTCCTTAACAATTCTGTTGGTGTGGAGGATCACACTGCTGGAAGTGCTTTGAATGGTGCTGTGATGGCTTTTGGAAGGCACAGTATGTTCATAAAGGAGTGCTTGGAAGAGTTCTATATGACATATGATGATACCNGTTTGAGATGGAATGGCGCTGATCTGTTGACAAGGGTTGCCCGAAAATTTTTGGGAGAGGACAAAACTATTAAACGGTTGGAGTTGAAAGTTGAACCCTCTCATATCTTCTTCCCCATCAGTTCTCAGGACATCACAAGATACTTTACTGCACCAGCAACAGAGACTGAGAAAGCTCAACAANATGTTCTGCTTGAAAAAATACTGCACGAGTCATTGACATTTCATTTCTGGAACAGCTTGACTTNTGCTCTCATCCCAGAACCAGAGAGCCTTGTGACTAGGCTTATGAATTATGCATGTATCCGATGCTTGGAGTTACTATAAATGCCAACTTACCCCAATTCTGTCCAGAGCTTCCATTCAGCACCACATATTAGGAATGCTCTGTATCTTTGGCTAACACACAAGATTGTAATCCTTGAAGTCATTGTCATAATACAGCTCGACATTGCAGTCCAGAAGACATCGGCGGGTTCTTTTCCATGTCGTTGTACAATTTTGTTGTATGTTCATAGTGAATTACTGGATTGAACTCCACTACTAGAAGATAGCTAAAATATACTGAAACCTCAGTAGAGAAAGACCAGCGTTATCTAATGCTCATGTATTATGTTATAACTAACAATNTAGTATGTGCTAGAGATGCGTGGCTCATCACTGCACGGTTTTGGTGGAATTGCAATGTCTATCTAACTGATATTTTTATTTTTTTTATTGGGCAACGAAGAAACGGAGAAAGATGTTNTTATTAATTTTTTAGAGTAAATTTGTCATTTTTGTCTCTAGAAGATAGAGGGTCGGTTAAGTTGGTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	249794	253858	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT32

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003900.1	PF04488.10	Gly_transf_sug	316	430	7.90E-23
Glyur000032s00003900.1	PF04572.7	Gb3_synth	443	572	7.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.382
SRR1783600	control	53.779
SRR1783602	moderate drought stress	72.578
SRR1811619	moderate drought stress	71.856

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.820
DRR006520	Root Summer glycyrrhizin high producing strain	36.341
DRR006521	Root Winter glycyrrhizin high producing strain	58.169
DRR006522	Root Winter glycyrrhizin high producing strain	56.809
DRR006523	Root Summer glycyrrhizin low producing strain	35.122
DRR006524	Root Summer glycyrrhizin low producing strain	35.594
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.517
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.802
SRR2868004	Drought Stress (root)	27.738
SRR2967015	Control (root)	32.372

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.882
SRR9715740	Leaf	10.507
SRR9715741	Leaf	18.961
SRR9715739	Root	18.298
SRR9715742	Root	38.500
SRR9715743	Root	34.641

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.299
SRR8749028	MeJA induced 9h	22.880
SRR8749029	MeJA induced 9h	26.652
SRR8749030	Uninduced	7.520
SRR8749031	Uninduced	5.325
SRR8749032	Uninduced	7.576

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.500
SRR8400027	Control - Root	31.493