Gene detail

Gene detail information of Glyur000032s00003899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19880.1	3.00E-166	Glutathione S-transferase family protein
NR	XP_003607882.1	0	Glutathione S-transferase omega-like protein [Medicago truncatula]
COG	YP_001370149.1	5.00E-115	putative glutathione S-transferase [Ochrobactrum anthropi ATCC 49188]
trEMBL	tr\|G7JIT9\|G7JIT9_MEDTR	0	Glutathione S-transferase-like protein {ECO:0000313\|EMBL:AES90079.1}

Sequence

Transcript Sequence

>Glyur000032s00003899.1
GTCTTACGTCACACTTTATAATTAATACAAAAAATATAGGTAGTGCGGTACGACATGAAAAAACAATTATTCCAACTTTACTATGACTATATTGTAGAGTCAGTGAGGATGATCTGTTCGAGATCACTGCTTCTGCTACGCCCCAGATGCTCCTTTGCCTTCTCTTTGTTTCCCTGCAACCGTAATTACAAGCATCTTGTTGAAATGGCACGATCTTCATTGGAGGAGATATCAGACTCAGGCGCGTTTGAGAGATCTGCTTCCACATTCCGGCAATTCGTTTCAAGGGACCCAAATTCCCAATTTCCAGCAGAGTCAGGAAGATATCATCTCTATATATCATATGCTTGTCCTTGGGCTTGTAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAATCCATTAGTTTCTCGGCAGTCAAACCCATATGGGGAAGAACTAAAGAATCAGATGACCGTATGGGATGGGTTTTTCCTGATTCAAAGACTGAGGTACTTGGAGCTGAACCCGATCCGTTGAATGGAGCAAAGAGTATTAGAGAAATTTATGAAATTGCAAGTACAAACTACACTGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTCAAGACAATTGTTAACAACGAGAGCTCAGAGATAATTCGCATGTTTAATACTGAATTCAACAATATCGCAGAGAACCCCACCTTGGATTTATATCCCTCTGATTTGAAAGCCCAAATTGATGAGACTAATGAGTGGATATATCCTTTTATAAACAACGGTGTTTATAGATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGATGCTGCAAGAGAATTGTATGAAGCTTTGGACAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAACACACTTACTGAAGCAGACATTCGTTTGTTTGTCACTCTCATTAGATTTGATGAGGTTTATGCAGTTCACTTCAAGTGCAACAAGAAGCTAGTGCGGGAATACCCAAATCTATTCAATTATACCAAAGACATTTTCCAAATTCCTGGCATTAGTAGCACAGTGAACATGGAACATATAAAGTTGCATTACTATGGAAGCCATCCTTCTATCAATCCATTTGGGGTCGTTCCCATGGGGCCAAATATTGATTATTCTGCTCCTCATGACAGAGAAAGGTTTTCTGCATAGGTTGTTTATTNTAGAATTGTAAGGGATGAGAAACTTCAGTATCTTTTAAGGGATTGTTTTGTTGAAATATTGCAGAAACAAATCTGTGTGTAATGTACTTTAATGTTAGAATTTATCTGTGATTNGGCTTCCATTGATTGATTTTGTTGTTTGTTAAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	246315	249218	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003899.1	PF13409.1	GST_N_2	98	205	2.40E-17
Glyur000032s00003899.1	PF13410.1	GST_C_2	254	322	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.080
SRR1783600	control	116.661
SRR1783602	moderate drought stress	90.037
SRR1811619	moderate drought stress	89.639

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	123.238
DRR006520	Root Summer glycyrrhizin high producing strain	121.108
DRR006521	Root Winter glycyrrhizin high producing strain	56.148
DRR006522	Root Winter glycyrrhizin high producing strain	54.466
DRR006523	Root Summer glycyrrhizin low producing strain	92.813
DRR006524	Root Summer glycyrrhizin low producing strain	92.848
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.229

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	158.065
SRR2868004	Drought Stress (root)	154.514
SRR2967015	Control (root)	146.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.064
SRR9715740	Leaf	36.906
SRR9715741	Leaf	58.373
SRR9715739	Root	12.732
SRR9715742	Root	54.777
SRR9715743	Root	47.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	104.809
SRR8749028	MeJA induced 9h	112.300
SRR8749029	MeJA induced 9h	104.264
SRR8749030	Uninduced	68.270
SRR8749031	Uninduced	47.257
SRR8749032	Uninduced	53.767

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	158.875
SRR8400027	Control - Root	141.006