Gene detail

Gene detail information of Glyur000032s00003896

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45040.1	7.00E-34	Cytochrome c
NR	XP_007157788.1	7.62E-52	hypothetical protein PHAVU_002G098700g [Phaseolus vulgaris]
Swissprot	tr\|Q93VA3\|CYC6_ARATH	9.00E-41	Cytochrome c6, chloroplastic (Precursor)
trEMBL	tr\|V7CHW3\|V7CHW3_PHAVU	3.00E-52	Uncharacterized protein {ECO:0000313\|EMBL:ESW29782.1}

Sequence

Transcript Sequence

>Glyur000032s00003896.1
CATAAATATGCAAGAATAAAAGTTATGCTGCTGTTTTAAGGGAAACATGTTAGATGTGGCCAAAATATAACATTTATGATATATATATATCTGCGGAGTAAACTGATATAGTGATTGTGTATCTCTGGAGTAAAAGTGCTAGTGGGGGTTAGACTTGAGAGACACAGTGACTCCTCATATCATAAATCAGTTTCAGCCCTTCAGATACGCATACAGAAGAAACCAAATGAAGCTTGCTTCCCTGATTTCTGGTTGCACTGATTACACTAGTCTCCTCTCCATCAAGGATAAGGTGAAAAGGGAAGAGAACCCCAATATTCCTAGTAGAAAGACAAAAGAAGTGAAGTTTTTCAAGAGCTTGGCTCCTCCTCTTGTGGCTGCGTTTCTCACCTTATCTCCAATTTGCGGCACTCCAGACATTGGACAAGATCTCAATATTCAGGATTCTGATTNATGGTTACTTGTAAGTGATAAACCATGTGGAGTAGAGCCTTTCAATTGGTCAAACCATAGATATTCAGAGAGGAGCCACATTGTTTCGTCAAACATGTATTGGATGTCACGATGCAGGTGGAAACATAATACAACCAGTGAGCATCCCTTTAGGCATGGCATCTCTTTATGTCCTTCTTCAAAACCAAATAAATTTCTTATATCTTCCTTATTCCTTTTCCATTTTTTNTCCTTTCAGGGGTCAACTCTATACACTAAGGATTTACAGAGAAATGGAGTTGACACAGAAGAAGAAATCTACCGTATCACATACTATGGCAAAGGAAGAATGCCTGGCTTTGGTAAAGAGTGCATGCCAAGAGGCCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGAGATCAAGATATTGGCCGAGTTTGTCAAATTACAGGCTGATAAAGGGTGGCCNAGTATAGAAACCGAAGAAAAATGATTTAGATATTAACTTTTGTTCCATCTTTTCATAATGAATTGGTACAAAATGACTGATTCACAATTATTTTGAGCTTATGCAGTGATTTTGTAGCCAGACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	219649	222193	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0009055 electron carrier activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.985
SRR1783600	control	2.139
SRR1783602	moderate drought stress	3.733
SRR1811619	moderate drought stress	3.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.003
DRR006520	Root Summer glycyrrhizin high producing strain	1.893
DRR006521	Root Winter glycyrrhizin high producing strain	0.131
DRR006522	Root Winter glycyrrhizin high producing strain	0.124
DRR006523	Root Summer glycyrrhizin low producing strain	1.339
DRR006524	Root Summer glycyrrhizin low producing strain	1.391
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.244
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.167
SRR2868004	Drought Stress (root)	2.775
SRR2967015	Control (root)	4.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.260
SRR9715740	Leaf	16.282
SRR9715741	Leaf	13.785
SRR9715739	Root	1.474
SRR9715742	Root	2.258
SRR9715743	Root	1.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.448
SRR8749028	MeJA induced 9h	0.451
SRR8749029	MeJA induced 9h	0.200
SRR8749030	Uninduced	0.542
SRR8749031	Uninduced	0.465
SRR8749032	Uninduced	0.312

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.789
SRR8400027	Control - Root	6.640