Gene detail

Gene detail information of Glyur000032s00003890

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76430.1	1.00E-156	phosphate transporter 1;9
NR	XP_003607875.1	0	hypothetical protein MTR_4g083960 [Medicago truncatula]
COG	YP_007174784.1	2.00E-81	arabinose efflux permease family protein [Caldisphaera lagunensis DSM 15908]
Swissprot	tr\|Q9S735\|PHT19_ARATH	0	Probable inorganic phosphate transporter 1-9
trEMBL	tr\|A2Q296\|A2Q296_MEDTR	0	Phosphate transporter {ECO:0000313\|EMBL:AES90072.1}

Sequence

Transcript Sequence

>Glyur000032s00003890.1
CGGCTGTTATATAGATGACAGTATAATATAATATATACGAAATTGAAAATATTCAATAAAGGACGAAATTGATTCGCATATTTGGTGGAATAACGCAGCACTGGTAAGTTTGACTTAAAACCCAATTGGTTGCTGCTCCAGGATTAGACTTAGACATGACGAATTCCATCTTCCGCCAAGCTTCCCAAACATCTTAATTTCCCCCTCAATTTCGTTGATTATAAGACGAGAACACGACAAATCTTAAATTTCCATGCTATATATACATCGACTTAATTGTGCAAATATTATAGCCACACATATATATACACNTACACATACATATCTGATATGATATCTGGCGCGTTGATTAATTCATTACCTTCGTCTTCATGAGCAGCTAGCACAAGATTAAGCTCCATATATGGGGTGCCAAATTACCCATAACTTGTTTGAAAATTGAAATTAAAGTATATTGCGAGGCGCGTGTTTAATTAGAGAGAAATTATAATTATAATTATAATTATAATGGCGAGACGATTGAAGGTGCTTTCGGCGCTTGACTCGGCGAAGACTCAGTACTACCACTTCAAGGCCATCATAATTGCGGGGATGGGACTGTTCACCGACGCCTACGACCTCTTCTCCATCACTCTCATCATCAAGATGCTGGGAAGGATATACTACACCCACGACCACCCTCCCATCCGTCAGGTCAAACCCGTCGTCGCCTCCGCCCTCGTCGCCGTCGCACTCCTCGGCACCGCCATCGGTCAACTCCTCTTCGGCAGGCTNGGCGACCTCAGGGGCCGTCGCTATGTCTACGGAAGCGCCCTCCTGTTCATGGTCGTCAGCTCCTTGGCTTCTGGCTTCTCCATTTCTACCACAAGAACCTCCGTCCTCCTCTCTCTTGGTTTCTTCAGGTTCTTCTTGGGGTTGGGGATTGGTGGAGACTACCCTCTATCTTCTACCATCATGTCCGAATTTGCCAACAAAAGGACGCGAGGGTCTTTCATAGCAGCAGTGTTTTCCATGCAAGGGTTTGGCATCTTGGCCAGCGCCATCGTCACCATGGTCGTCTGTTCCATATTCCGCCGCGCTTCTCGCCCCTCCTCGCACTATCATACGCCGCCGGAGGCTGACGTTGCATGGAGGTTGATACTGATGTTGGGATCGGTTCCGGCGGCCATGACTTACTACTGGCGTATGAGGATGCCGGAAACTGCCAGGTACACAGCGTTGGTGGAACAAAATGTGTTGCAAGCAGCAAAGGACATGGAGAAAGTATTGGATGTGTCATTGAGCCAGATTGCGGAAGAAAATCCTCTCCCACCGACCCCACATGCTGCATACCCTCTCCTTTCCAGGGAATTCTTGCATCGACACGGTGGCGACCTCTTCGCTTGTTCCGCTAATTGGTTTTTGTTGGACATTGTGTTCTACAGCCAGGTTCTGTTCCAGAGCGAAATTTATAAGCGCTACCTCAAGGACAAAGAATCAATGGACATCTATGAAGAGGCTATCCATCTAGCTTGGATCCAAGCCATCATTGCCATGTGTTCCACTATCCCTGGCTACTTCTTCTNTGTCTACTTCATCGATCGCGTGGGAAGGGTCAAAATACAAATGATGGGTTTTTTCGTCATGGCATTGACTTTCTTCGCCATCGGGATTCCCTATTACTCCCATTGGACCACCGAGGAAAACAAAAAAAATAAAGGCCTCGTAGTCCTCTATGGCCTCGCTTTCTTCTTTGCCAATTTTGGACCCAACACCACCACTTTTATNGTTCCAGCTGAGCTCTTCCCGGCCAGGTTTAGGTCAACTTGTCACGGCATTTCTGGGGCTGTTGGCAAGGTTGGGGCAATCATTGGGTCTGTTGGGTTTCTGTGGGCTTCACATAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGTATCCCAAGGGAATTGGGATGACAGCCTCCCTCATCATACTTGGAGTGGTGTGCCTAGTGGGGATGTTTGTCACCTTCTTTTTCACCAAGGAAACCATGGGAAGGTCTTTGGAAGAGAATGAGATTGAGTCCACTCATGATCAAGCCGATCGAAGAATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	199996	204710	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003890.1	PF00083.19	Sugar_tr	25	509	2.80E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.958
SRR1783600	control	4.752
SRR1783602	moderate drought stress	10.591
SRR1811619	moderate drought stress	10.628

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.335
DRR006520	Root Summer glycyrrhizin high producing strain	11.217
DRR006521	Root Winter glycyrrhizin high producing strain	2.374
DRR006522	Root Winter glycyrrhizin high producing strain	2.545
DRR006523	Root Summer glycyrrhizin low producing strain	7.939
DRR006524	Root Summer glycyrrhizin low producing strain	8.241
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.215

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.510
SRR2868004	Drought Stress (root)	34.852
SRR2967015	Control (root)	20.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.618
SRR9715740	Leaf	68.369
SRR9715741	Leaf	59.160
SRR9715739	Root	10.987
SRR9715742	Root	17.810
SRR9715743	Root	17.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.074
SRR8749028	MeJA induced 9h	5.075
SRR8749029	MeJA induced 9h	2.000
SRR8749030	Uninduced	4.782
SRR8749031	Uninduced	0.444
SRR8749032	Uninduced	0.622

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.433
SRR8400027	Control - Root	14.770