Gene detail

Gene detail information of Glyur000032s00003879.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24318.1	2.00E-138	O-Glycosyl hydrolases family 17 protein
NR	XP_004505326.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase-like isoform X2 [Cicer arietinum]
Swissprot	tr\|P52409\|E13B_WHEAT	5.00E-159	Glucan endo-1,3-beta-glucosidase (Precursor)
trEMBL	tr\|G7JIQ2\|G7JIQ2_MEDTR	0	O-glycosyl hydrolase family 17 protein {ECO:0000313\|EMBL:AES90042.2}

Sequence

Transcript Sequence

>Glyur000032s00003879.1
AGCCCATATACGAATTTATGCATAAAAAATAGATGGCACATGTTGATTGGAATCATAGAACCTCAAATCGAAACCGCAACCTTGGAATGACGTTGAGTTTGGAGCAAAAGATGCGCCCCACTGGATGCCGGTGTTAGAAGTTGGACTTCATTGAATCAAAGTTAGTTTCAACACTCACTCACTTCAACTAAGCTTCATATTCATACCACTCTCTCTCTCTCTCTCTCTCTCCCACAATCACACAAACAAAACGCACTCTCTGAAAAGTGAAAATGGCCAAACCATTTCACTTGCTCCTCCTCCTCCTCTTAACTTGCCACCTCATCCCTCACGTTTCCTTTGCCTCCCCATCNAACAAAATCGGCGTCAACTACGGCACAGTCGCNGACAACCTCCCTCCACCGTCGACGGTGGCGTCCTTCCTGAAATCCCAGACAACCATCGACCGCGTGAAGCTCTTCGACGCGAACCCCGACATCCTCCGCGCATTCGCAAACACGGGCATCTCCGTCACCGTAACGGTTGCAAACGGCGACATCCCTTCCCTCTCGAAGCTTCCCGCAGCGCAATCATGGGTCTCCACCAACATCCTCCCCTTCCACCCCAAAACCACCATCAACCGCATCGCCGTCGGCAACGAAATCCTCGCCACCTCCGATAAGGTCCTCATAGCCCACACTCTCCCCGCCATGAAAGCCCTCCACCAAGCCCTCACACTCGCAAACCTCACCCACGTTCAAGTCTCCACCCCTCACTCCCTCGGAATATTATCCTCGTCGGAACCACCGAGCACCGGCCGTTTCCGCCGCGGCTACGACCGTGCAGTGTTCGCTCCCATTCTCGAGTTCCACCGCCAGACAAAATCCCCCTTCATGGTTAACCCGTACCCGTTCTTCGGGTTCGATCCGGCCCGCCCCGATACTCTGAACTACGCGCTGTTTAGGCCCAACGGCGGCGTTTTGGACGCGGCCACTGGGGTGAACTACACCAATATGTTCGATGCTCAGATGGACGCGGTATACTCGGCGATGAAGAGGCTGGGGTACGATGACGTGGAGCTTGTGGTGGCGGAAACGGGTTGGCCTTCTGCGGGTGACCCGAACCAACCGGGCGTGGGGTCGGAGAATGCGGCGTCGTATAATGGGAACCTTATTAGGCACGTTAACTCTGGGAGAGGGACACCATTGATGCCCAATAGGACCTTTGATACCTACATCTTCTCCTTGTTCAATGAGAATCTTAAGCCCACCGTTTCGGAGCGAAACTACGGGTTGTTCAAACCCGACCTATCCCCGGTTTACGACGTCGGCGTTTTCACCCAACAACACCAACAGGTGATGGGTCCCGCGTCTGGGCCCACGGCAGAGGCACCTTCATCGGGGTCAGGTTCTTCTTCAAAGGAGTGGTGCGTGCCGAAGAAGGAGGCTAGTGAGGTGGCGTTGCAGGCCAACATTGACTACGCGTGCAGCAGCAGCAGCAGCAGCAGCAGCGGGATAGACTGTGGGCCCATAAAGGAGGGTGGGCCATGCTTCAAGCCCAATACAGTGAGGTCCCACGCGGCTTACGCCATGAACGCATATTATCAGGCATCCGGTCGCCACGATCTCGACTGCGATTTTGGCCACACTGGACTCATCACTTACACCGACCCTAGTTATGAGACGTGTACGTATCCATATGCAGCTACAGGGGCAAACCTAAAGACCGGAAAGCCCGATACAGGTGGCTCCCTCAGATCCGCCACCTCCAATGCTGGACTTTTCTACTGTCACTTATTATCATTATTATTTCATCTTCCACTTCTTTTTTGTCTCTGTTTTTTCTAATTTATATTNTGCCCATGTTCCTGTTAATATTATGGACGACAACATAATTCGATTTTNAAGTGTAGGATTTCTTTTTTCTTTTTTTGGGCTTCCTCTCGCATAAACTCTACTGNATTCTTGGCAAAATGGGAAGGATTTAATTATCAACTAACTAAACTAAACTAAGGCATGTTGCTCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	160361	163278	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003879.1	PF00332.13	Glyco_hydro_17	30	345	1.80E-86
Glyur000032s00003879.1	PF07983.8	X8	378	453	8.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.133
SRR1783600	control	96.214
SRR1783602	moderate drought stress	52.109
SRR1811619	moderate drought stress	50.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.377
DRR006520	Root Summer glycyrrhizin high producing strain	27.521
DRR006521	Root Winter glycyrrhizin high producing strain	25.247
DRR006522	Root Winter glycyrrhizin high producing strain	23.964
DRR006523	Root Summer glycyrrhizin low producing strain	38.584
DRR006524	Root Summer glycyrrhizin low producing strain	38.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.270
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.909
SRR2868004	Drought Stress (root)	13.642
SRR2967015	Control (root)	15.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.191
SRR9715740	Leaf	0.527
SRR9715741	Leaf	3.239
SRR9715739	Root	59.701
SRR9715742	Root	42.736
SRR9715743	Root	40.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	116.894
SRR8749028	MeJA induced 9h	76.015
SRR8749029	MeJA induced 9h	74.277
SRR8749030	Uninduced	34.997
SRR8749031	Uninduced	6.695
SRR8749032	Uninduced	21.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.307
SRR8400027	Control - Root	43.078