Gene detail information of Glyur000032s00003877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60170.1 | 1.00E-08 | pre-mRNA processing ribonucleoprotein binding region-containing protein |
| NR | AFK40189.1 | 2.55E-25 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SIU7|I3SIU7_LOTJA | 1.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK40189.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 155315 | 157882 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003877.1 | PF09785.4 | Prp31_C | 4 | 59 | 9.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.123 |
| SRR1783600 | control | 0.151 |
| SRR1783602 | moderate drought stress | 0.533 |
| SRR1811619 | moderate drought stress | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.620 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.721 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.955 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.680 |
| SRR2868004 | Drought Stress (root) | 1.921 |
| SRR2967015 | Control (root) | 1.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.057 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.033 |
| SRR9715739 | Root | 0.035 |
| SRR9715742 | Root | 0.025 |
| SRR9715743 | Root | 0.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.452 |
| SRR8749028 | MeJA induced 9h | 0.728 |
| SRR8749029 | MeJA induced 9h | 1.048 |
| SRR8749030 | Uninduced | 0.057 |
| SRR8749031 | Uninduced | 0.026 |
| SRR8749032 | Uninduced | 0.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.552 |
| SRR8400027 | Control - Root | 0.052 |