Gene detail

Gene detail information of Glyur000032s00003875

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45100.1	2.00E-63	SBP (S-ribonuclease binding protein) family protein
NR	XP_007157803.1	1.52E-142	hypothetical protein PHAVU_002G099600g [Phaseolus vulgaris]
Swissprot	tr\|Q9FHE4\|BRG1_ARATH	5.00E-87	BOI-related E3 ubiquitin-protein ligase 1
trEMBL	tr\|V7CHX7\|V7CHX7_PHAVU	6.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESW29797.1}

Sequence

Transcript Sequence

>Glyur000032s00003875.1
AAATATTATGCCTAGACTAGACTAGATTTCCCTCTCTCTAGGGGATAAAAAAGAATGCGTTTTGACTTTCTCTCTCTACCACACACNCAAGAGCCAAAGCCATAAATAAAACGGGACTCATTCATTGTTGGTTCCCGAGTAGTCGCCACCTCAATTGCATGCTTTGTTATTCTCTCCTCTTATTAATTCCCTTTCTCTTCANCCGTTTGCATTTGTATCAGTGCAACAACAAGAAGGAAGATAGAAACGCAGAGAAAACCGCGAGAGCGCCCAACCAACTCTCAAAGATCAAAATCGTAACGGGGTAACCAACTCTCGTACATGGCGGTTGAAACTCCACACATGAATCTCTTCCCTCCACAGTTACTAATCAATAGAGAAATGATCAAACCCAATCACCACAACTTGTACAATGCCCAGATGGATGGTGCAGTGCCTCTGTCCTCAACAATGCCCGAATCACTCTTACCCTTTCATCAACCCACNCTGTGTGATCCGAATTCGATGAACAAGGCTGACAGTGGCCTCACCTACCACATCCCTGTTCCGAGGAAGCGATCCAGAGACTCCTTCGCCGAATCAAACGCTCTCCCAGTTCCACAGAAGAACAAGCTCTCATCTCCTTCATCACCCTTTCTTGACCAACAACTTCTCTATCATTTCCACACCCAGCAATCCGAGATCGATCGCTTCATTGCCCAACATACAGAGAAAGTGAGAATGGAGTTAGAGGAGCAGAGGATGAGGCAATCAAGAATGTTACTGTCGGTAATCCAAGAGGCAGTGGTGAAGAAACTGAAGGAGAAAGAGGAAGAGATTCAGAGAATGGGGAAGCTGAACTGGGTGCTACAAGAAAAGGTGAAGAGCCTGTGCGTGGAGAACCAGATTTGGAGGGAGATGGCGCAGACAAACGAGGCAGCGGCCAATTCCCTGCGGAGCAATTTAGAGCAAGTGCTGGCGCACGTTAGCGAGGACCACCACCACGACCACGGCGGTGCGGCAGCGGCGGAGGATGACGCCGAATCGGTTTGCTCGACCAACCACCACGACGAGGGAAACGATGCGGCGGCGGTGGGTGGAAGGATGTGCAACCAGTGCGGGGTAAGAGAGTCCATAGTGCTGTTGCTTCCGTGTAGGCATCTGTGTCTATGTACAATGTGTGGGTCCAGTATCCGCAATTGCCCTCTTTGTCATTCTGGCATCAATGCTAGTGTCCATGTTAATTTTTCTTAACAGTTTAGATACAAAGAACCATCACAGCAAATTAATTGTTCACAGTGAACCATGAAAATATACACCGTGATACATGTTACTAATTTTAGGTCCTTTGTTGCATTTTTGGAGGAGATAGGTTGTCAAGGTTAATGAAATTGCAAGTATAACCTTGGTATAAAATGTTCTCAAGTGACGCGAGTTGTCGTTTGTGCCCCTATGCGCAAATGCTTGAATGGGGAGGGAAGATCGCGCTAGAAAAGGAGACTGACTGGTGCAAAATCCCTCTTCATCTCCAATAAAACACGTTTGGGGAATCCATTGACAAGAGAAACCAACATGTGCAAATAAAACACGCATTTTTCCTCTAATTTAAATGAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	136823	138734	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003875.1	PF13920.1	zf-C3HC4_3	254	296	4.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.736
SRR1783600	control	18.982
SRR1783602	moderate drought stress	34.659
SRR1811619	moderate drought stress	34.259

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.439
DRR006520	Root Summer glycyrrhizin high producing strain	68.225
DRR006521	Root Winter glycyrrhizin high producing strain	107.140
DRR006522	Root Winter glycyrrhizin high producing strain	104.390
DRR006523	Root Summer glycyrrhizin low producing strain	95.580
DRR006524	Root Summer glycyrrhizin low producing strain	94.936
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.141
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.075

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.735
SRR2868004	Drought Stress (root)	52.958
SRR2967015	Control (root)	53.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.086
SRR9715740	Leaf	10.252
SRR9715741	Leaf	9.143
SRR9715739	Root	29.169
SRR9715742	Root	34.984
SRR9715743	Root	33.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.488
SRR8749028	MeJA induced 9h	48.626
SRR8749029	MeJA induced 9h	79.541
SRR8749030	Uninduced	111.858
SRR8749031	Uninduced	111.576
SRR8749032	Uninduced	88.880

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.598
SRR8400027	Control - Root	28.824