Gene detail

Gene detail information of Glyur000032s00003874

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31260.1	8.00E-124	zinc transporter 10 precursor
NR	AAC17441.1	0	root iron transporter protein [Pisum sativum]
Swissprot	tr\|Q8W245\|ZIP10_ARATH	2.00E-158	Probable zinc transporter 10 (Precursor)
trEMBL	tr\|O65348\|O65348_PEA	0	Root iron transporter protein {ECO:0000313\|EMBL:AAC17441.1}

Sequence

Transcript Sequence

>Glyur000032s00003874.1
ATGGCCACTAATTCAGTAACTCTACCCAAGGTGATCTCAATCATCTTCATCTTCATCACTCTGTTCACATCCCAAGCTGTGGCTGATTGTGAATCCGAATCATCAGACAAATGCAACAACAAAGAAAAAGCCGAAACTCTTAAAATCATATCCATCTTCGCAATCTTGGTGACTAGCATGATCGGCGTGTGCTTACCCTTGGTGACACGTTCAATCCCTGCTTTGAGACCTGAAAACGACCTCTTCATAATCGTGAAGTGTTTCGCGGCTGGTATCATTCTCGGGACAGGGTTCGTGCACGTGCTTCCCGATTCGTTCGACATGCTCTGGTCTGATTGTCTTGATGAGAAACCGTGGCATGAGTTTCCGTTTTCGGGGTTTGTGGCTATGCTCTCTGCGGTGATTACGATGATGGTGGACTCTTTGGCTACTACTATTTATAGCAAGAAGGGTAGGACTGGAGTTATTCCAGCTGATCANGCAAGTGTGGCTGGTGGTGGGGATCATGAGATGGGTGCTGTCACTCCTGTAAGTGTCGTTGGGCACTCACATGGTCACCACCACTTTCATCATCATGGTGATCAGGTCAAGACAGAAAGCGCAGAGACACAGCAGCTTCTGCGTTATCGTGTAGTCGCCATGGTATTGGAGCTTGGAATTGTTGTTCATTCAGTGGTGATAGGACTTTCCATGGGAGCCTCCAATAATACNTGCTCATTAAAAGGTCTTGTGGCCGCACTTTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGTGGGTGCATTCTCCAGGCGGAGTACAAGTTATTAAAGAAGGCCATCTTGGTTTTCTTCTTCTCAGTGACAACCCCACTTGGGATTGCCTTGGGAATGGCAATGTCAACGAGTTACAAAGAGAACAGCCCAAAAGCACTAATCACCGTGGGATTGCTTAATGCATCCTCTGCTGGCCTTNTAATCTACATGGCTTTGGTTGACCTGCTCGCTGCTGATTTCATGGGTCCAAGGATGCAGGGCAGCGTTAAGCTTCAATTGAAATCTTACATAGCCGTATTTTTGGGTGCTGGTGGCATGTCTCTCATGGCTAAATGGGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	121223	123820	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003874.1	PF02535.17	Zip	47	362	1.40E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.878
SRR1783600	control	0.837
SRR1783602	moderate drought stress	0.098
SRR1811619	moderate drought stress	0.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	196.107
SRR2868004	Drought Stress (root)	279.468
SRR2967015	Control (root)	125.720

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.030
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.060
SRR9715739	Root	0.576
SRR9715742	Root	0.028
SRR9715743	Root	0.492

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.448
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.819
SRR8749031	Uninduced	0.530
SRR8749032	Uninduced	0.367

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.822
SRR8400027	Control - Root	32.434