Gene detail

Gene detail information of Glyur000032s00003870

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G31280.1	Argonaute family protein
NR	XP_003607856.1	Protein argonaute [Medicago truncatula]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	Protein argonaute 2
trEMBL	tr\|G7JIR3\|G7JIR3_MEDTR	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur000032s00003870.1
AAGCCAAGCCTAGCCAAGTAAACACTGTCTGTGAGGGACATTCCCGTAATTTCGTCAACTCCCTCTATAAATTGATTCCCTATACTTCCGCTTCGTGGTAGTTGCTGTTGCAGTAGTAGCGTGTGTGTGTGCTTAAGTTGCTTCTTCGTTTTTAGTTTTTTACTTTCAGTTTCCTCGCTCCCGTTTACTCCAATTTCAATTCGGATCCCCAATGGAAAGAGGCGGTTACAGAAACAGTGGCAGAGGAGGAGGAGGCCGCAACGGTAATGGCGGCAGAGGAGGAAGGTTTTATCAACAACAATCCCACCATCCCGGCGGCGGCGGTGACGGAAGAGGAGGAGGACGAGGGTTTCCTCCCCAACATCAACAACCACAACAACAACAACAGTGGAATCCAAGGCCNAGGCCAGTGACAAACCCCTCCTCATCCGCCCAAACTCACTCTCACAGTGGATCTTCAAGTTCAAATCCTCCTCCCAATCGGAACCCCAACCGACCTCAAGCACAAACTCAAACTCTTCCACATCCAGATATTGGCTCTCTAAGGATAAAAGAGCAGGCAGTGGAGACGATCACACCCAAGCCCGTACACAGGCCTGACAAAGGGGGAATAGTAGCAATTCGTGAATGCAGACTGCGCGTGAATCACTTTGCCGTCACCTTCAATCCACAGAGCATAATCATGCACTACAATGTGGACGTGAAGGCGGCAGTGCCAGCGAAGAAGGGTCGGCCTCAGAAGATTTACAAGTCTGACCTGTCCATGATCAGGGACAAGCTGTTCTCCGATCACCCCCAGAGGTTGCCGTTGGCGATGACCGCTTACGACGGAGAAAAGAGTATCTTCAGCGCAGTGCCATTGCCGGAGGAGACTTTCACCGTCGAAGTCTCCAAAGGGGAAGACGAAAAAACAGTGTCCTATGCGGTTACTCTCACGCTTGTGAACAAACTGGAGCTTCGCAAGTTGAGGGATTATCTCAGTGGCAGAGTATTCTCTATTCCTAGGGATATTCTACAAGGGATGGATTTGGTGGTAAAGGAGAATCCATCGAGGCGCACGGTCTCTCTTGGACGATGCTTCTTTCCCTTAAATCCTCCTATGGTTGAGAGGGAACTTCAGCCTGCTGTAGTTGCAATTGGAGGGTTTCAGCACAGTCTGAAAACCACTGCTTCGGGTTTGTCTGTCTGTCTTGATTATTCGGTTTTGTCTTTTGTTAAGAAAATGTCAGTGCTGGAATTCCTTCACACTTATATAGAGGGTTTCAATTTGTCTGAATTTTGGAAATTCAAGAGAGATGTGGAGGAGGCACTTTTTGGGTTGAAGGTTAATGTCACTCATAGGAGAACCAAACAAAAGTACACTATTGCCGGACTAACCCCGAAAGATACACGCCACATCACTTTTACTATCTTGGATCCCGAGGGCCAAAATCCCCCTAGGAACTCCACTCTTGTTGCTTACTTTAAAGATAAGTATGGAGTTGATATTGAATACAAGGATATCCCTGCCTTAGATTTTGGGGGAAACAAGAGTAATTATGTGCCTATGGAACTCTGTGTTTTGGTTGAGGGTCAGAGATACCCTAAGGAGCTGCTGGACAAGAATGCTGCGAAGGACTTGAAGAAAATGTCCTTACCTACCCCAAGGGAGAGAGAATCTATAATACAGAGGATGGTGAAGTCAGACGATGGACCATGCGGTGGTGGTATTCTTAAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACGGGACGTGTAATTGGGCCTCCAATATTGAAGTTAGGTGATTCAAATGGCAATACTACTCCTATGAAACTGGATCCGGAGAAGTGTCAGTGGAATCTAAATGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGTGTTGGGGAATTCTTGATTTTACCAGCAATGGGCCTCAATGGTGTAAATTAAGAGGCAATCAGTTCGTTCAGAGACTTATGGGTAAGTACACAAAACTGGGCATTCACATGAACGAGCCAGTTTGGTATGAGCAGTCTACAATGAGGAAACTTGGGGATTATAATTTACTACGTGATTTGCTTGAAAAAATTAATGAGATGGTTCAGAAAAGATGTCGACGACGGCTGCAATTTCTCCTTTGTGTGATGTCCAACAAAGACAAAGATAATGGTTACAAATCCCTCAAGTGGATTGCTGAAACCAAGGTTGGCATAGTGACACAATGCTGCTTATCTGGTAATGCTAATGAAGGGAAAGATCAATATCTGACAAATCTTGCTCTCAAGATCAATGCAAAAATTGGAGGCAGTAACGTGGAGCTCATTAATAGGCTCCCACATTTTGAGGGTGAAGATCATGTTATGTTTATAGGGGCTGATGTCAATCACCCCGCTTCTCGGGACACCAACAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAACTGGCCTGGCGCAAATCGCTATGCTGCACGTGTTTGCGCTCAGGGCCATCGAATTGAGAAAATTTTGAACTTCGGAGAAGTTTGTCTTGATCTTGCTACATATTATGAGAAGTTGAACAATGTTAGGCCCCGAAAAATTGTCATCTTTCGCGATGGTGTAAGTGAGAGCCAATTTCACATGGTTCTTGCTGAGGAGCTGCAAGATTTGAAGACAGTATTTCATCGCTCGAATTACTTTCCGACCATCACTCTTATCGTAGCTCAAAAGCGACATCTGACTCGATTNTTTCCTGCGGGTGCGAGGGAGGGGGCTTCCAATGGCAATGTATTCCCTGGAACAGTTGTGGACACAAAGGTTGTACATCCTTTCGAATTTGACTTTTATCTTTGTAGTCACTCTGGAAGCCTAGGTACAAGCAAGCCCACTCACTATCATGTACTGTGGGATGAACACAAGTTTACTTCTGATGGTTTGCAGAAACTCATATATGATATGTGTTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGACGACTATACTATGAAGCAAGGATTTGTGTGCAATCTCCAGATTCAGCTGCATCTTCTTCATCATCGCGTACAACTTCTTCATCCCTTTCTTCAACAGCCTCAGTTTTAAATGATCTGGGGTTTTCCAAGTTGCATCCTGATATGGAAAACATGATGTTCTTTGTCTGAAGGCCCACATATGCTGTTTCTTTTGTGGTTGAAGAACTGATAACTTCTTTGCTCCTCTATTGTTTGGTAAAACTTCTCTGCTCTCTTTGCATTGGGACAAACTATGAAATAGTAAAGTAGTTTGTGCGTGAATCTAATGGGTCACCTGTCTTGTCCTTTGTTCTTAGTACTTTCAGTCGGATGTTGCTCGTGTTATTTTAGTTGGTAATTGGCCTATTGGTTTTGAGTCATTTTGTTGATATGCAAGTCTGATGTGGCTTTTGGTAGTTTACATGCACCTTGCGTGTGTCTTGTACTCTTGTAGTAGGTTTCATGCGTCATTGTNAACGTGTTTGAATGTAATTATTTTTAAAAT

Protein Sequence

>Glyur000032s00003870.1
MERGGYRNSGRGGGGRNGNGGRGGRFYQQQSHHPGGGGDGRGGGRGFPPQHQQPQQQQQWNPRPRPVTNPSSSAQTHSHSGSSSSNPPPNRNPNRPQAQTQTLPHPDIGSLRIKEQAVETITPKPVHRPDKGGIVAIRECRLRVNHFAVTFNPQSIIMHYNVDVKAAVPAKKGRPQKIYKSDLSMIRDKLFSDHPQRLPLAMTAYDGEKSIFSAVPLPEETFTVEVSKGEDEKTVSYAVTLTLVNKLELRKLRDYLSGRVFSIPRDILQGMDLVVKENPSRRTVSLGRCFFPLNPPMVERELQPAVVAIGGFQHSLKTTASGLSVCLDYSVLSFVKKMSVLEFLHTYIEGFNLSEFWKFKRDVEEALFGLKVNVTHRRTKQKYTIAGLTPKDTRHITFTILDPEGQNPPRNSTLVAYFKDKYGVDIEYKDIPALDFGGNKSNYVPMELCVLVEGQRYPKELLDKNAAKDLKKMSLPTPRERESIIQRMVKSDDGPCGGGILKNFGMNVNTSMTNVTGRVIGPPILKLGDSNGNTTPMKLDPEKCQWNLNGRSMVEGKPVECWGILDFTSNGPQWCKLRGNQFVQRLMGKYTKLGIHMNEPVWYEQSTMRKLGDYNLLRDLLEKINEMVQKRCRRRLQFLLCVMSNKDKDNGYKSLKWIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEGEDHVMFIGADVNHPASRDTNSPSIAAVVATVNWPGANRYAARVCAQGHRIEKILNFGEVCLDLATYYEKLNNVRPRKIVIFRDGVSESQFHMVLAEELQDLKTVFHRSNYFPTITLIVAQKRHLTRXFPAGAREGASNGNVFPGTVVDTKVVHPFEFDFYLCSHSGSLGTSKPTHYHVLWDEHKFTSDGLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARICVQSPDSAASSSSSRTTSSSLSSTASVLNDLGFSKLHPDMENMMFFV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	96265	100838	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003870.1	PF08699.5	DUF1785	284	336	5.90E-09
Glyur000032s00003870.1	PF02170.17	PAZ	340	474	1.60E-25
Glyur000032s00003870.1	PF02171.12	Piwi	639	937	1.30E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.339
SRR1783600	control	22.523
SRR1783602	moderate drought stress	27.831
SRR1811619	moderate drought stress	27.952

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.296
DRR006520	Root Summer glycyrrhizin high producing strain	36.702
DRR006521	Root Winter glycyrrhizin high producing strain	18.838
DRR006522	Root Winter glycyrrhizin high producing strain	18.472
DRR006523	Root Summer glycyrrhizin low producing strain	56.395
DRR006524	Root Summer glycyrrhizin low producing strain	56.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.802
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.870
SRR2868004	Drought Stress (root)	41.658
SRR2967015	Control (root)	33.218

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.629
SRR9715740	Leaf	8.177
SRR9715741	Leaf	10.706
SRR9715739	Root	34.432
SRR9715742	Root	79.575
SRR9715743	Root	68.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	76.575
SRR8749028	MeJA induced 9h	69.608
SRR8749029	MeJA induced 9h	46.019
SRR8749030	Uninduced	14.414
SRR8749031	Uninduced	9.745
SRR8749032	Uninduced	15.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.883
SRR8400027	Control - Root	66.131