Gene detail

Gene detail information of Glyur000032s00003867

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G18520.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004505335.1	PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Cicer arietinum]
Swissprot	tr\|Q0WNP3\|PP319_ARATH	Pentatricopeptide repeat-containing protein At4g18520
trEMBL	tr\|K7N0X2\|K7N0X2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G02830.2}

Sequence

Transcript Sequence

>Glyur000032s00003867.1
CCATTCCTGCGTGTTCATTTGGATGGAATTGGAATGGAAAACGGTGGGAGGGAATGAGTAGCTGTGACATCACTATTACTAACACGGAACGGAAGGCCTCGTTTCGTTATCCTTGCCTTGCCTTGCCTCAGTTCAGTTCAGTTCAGCTTCGCCCCCTTTCCCTCTCTTTCTTCTTCCCACCGCCATGCTCTATTGACACTCCNTATTTCCTATTCCCTGCAACCTCAACCTGAAAGCGACTTCATCACAAGTTGGGATATTTTCAAGCTTATACTTTTTATTTTTATTTTTTATATTTTTTGAATTTGGTTCACCACCGCCAGCGCCAGGTCCCCTTTCTTGTGTATTCTCCTCATGTCTAACGCCGTCACCTATCACCCANTCATGGAGTTAAGGACTGCTGCTATTCTTCATTCCTGCTCTTCACTTCCTCCGAGGTTTCCCCCTCTTAAACCCCCTGCTGCAGATTTTGCTTCTCCCTTCTCCTTTTCCATTACTAATCCCCTTCGGACTCCATGCTTCACTTTTACCTACAGAGATCAGCAGCATTCCTTTCCAACTGCTGCCAGTTCTCGTGACACAAGGGCAGTGCTGAGTTGTGTTGGCAAAGGGTTGACATGTACCAGTACCTCTGGTTCTGCTTGTTCTTATGATGATCCCAATGGAGGTGATGAGAAAAGGGACAACGATCATGGCACAGGGTTCTTCGATAACAACCAAATGATTAGAGATTGTGATAAGCTAATTGAGACTTTCCTGGTGGACAAGCCTGCCTTGGCCGATTGGAGAAGGCTGTTAGTTTTCAACAAGAAGTGGANCAATATCAGGCTCCATTTTTTCAGACACTGTCAGGATAGAGCAGACTCCGAAGACATTCTACTGATGAAGAACAANCTGCTCTGGCTTGGAAAGAAGCTTAAAGAGATAGATGAAGATGTACAGAGGCACAATGAACTTATTGAAATGATCAAACGGGCTCCATCTGATATTAGTGACATTGTCTCCCGGAATCNTAAATATTTCACAAAAGAATTTTTTGTGCATCTTCATACAGTAGCTGAATCTTATAACGATAATCCAAAAGCACAAAATGATTTGGTAAAACTTCGGAACACATGCTTGGCTGCTGTAAAAGTCTTCGATGCGTCAACTGAAAGTATTGAAGCACTAAAGGCAGCAGAGTTGAACTTTCAGGATGCTTCCTGCAGGAGGATAGACAATTTTGCTGAGAAAGGTCAATGCTTCAATCCAGAATTAGTCGCTCGTTGGCTGCGGTTGTGTTATGATGTNGAAGAAGTAGGAAAGGTACATGCAATTGTCTTGAAATGTTTCAGAGATTCAGTTACTTATGTTGATAATAATTTGATTTGTAGTTACTTGAGATTGGGTAAGTTAGCTCAGGCTCGTAGAGTGTTTGATGGCATGCAAAGAAGGGATACAGTTACATGGACTGCTATTATTGATGGGTATTTAAAATTCAACTTGGATGACGAAGCTCTTAGGTTATTTCATGATTCAATCAAGCACGNGGTTCAAGCAAACAGTAAGATGTTTGTCTGTTTCATGAATTTGTGTTGTAAAAGAGTGGATTTAGCACTGGGAAAACAAATCCATGCTCATATCTTGAAAAGCAACTGGAGGAATTTAATTGTTGACAGCGCAGTTGTTAATTTTTATGCAAAATGTGGTAAGATATCAAGTGCATTTCGAACATTTGATTGTATGGCAAGGCGAGATGTGGTATGTTGGACAACTATAATTACTGCTTGTTCCCAACAAGGGCTTGGGCATGAAGCCTTGTTAATGTTGTCACGAATGCTAGGTGATGGGTTCTTTCCTAATGAATATACTNTATGTGGTGCACTAAAGGCCTGTGGAGAGAATAAAGCATTGAAATTTGGGACACAGCTGCATGGTGCCATAATAAAGAAAATCTGTAANAGTGATGTTTTTGTGGGAACTTCCCTAATTGATATGTATGCAAAATGTGGGGAGGTTGTGGTTTCTAAAGAAGTGTTTGATAGAATGAGGGTTAGAAATACAGCTACTTGGACGTCCATTATATCAGGATATGCCCGAAATGGGCATGGTGAAGAGGCCATAAGCTTGTTTCGGTTAATGAAGAGGAAAAAAGTACATGTTAATAAACTGACAATTGTAAGTGTCATGATGGCTTGTGGCACAATTAAGGCTTCTCTAACTGGAAGAGAGGTCCATGCACAAATAATCAGAAGTCTTATCCACACTAACATGTACATAGGAAGCACTTTGGTATGGTTCTATTGCAAATGTAAAGAATACTCTCATGCTTTCAAGGTGCTCAAACATATGCCTTTTAGGGATGTTGTTTCATGGACTGCCATTATATCTGGGTGTGCTAGGCTTGGGCTTGAAACCGAGGCTCTGGAGTTTTTGCAGGAAATGATGGAGGAAGGCGTGCTGCCTAATTCCCATACCTACTCGTCGGCTTTGAAAGCGTGTGCAAAATTAGAAGCTCCAATGCAAGGAAAATTGATTCATTCCTATGCAAGCAAGACCACTGCCTTGTCTAATGTATTTGTGAACAGTGCTTTAATATACATGTATGCAAGATGTGGGTATGTTACAGATGCTTTTCAAGTTTTTGACAACATGCCAGAGAGGAATTTGGTTTCTTGGAAAGCCATGATCTTGGGATATGCAAGGAACGGGCATTGTGGAGAGGCTTTAAAGCTCATATATAGAATGCGAGCTGAAGGTTTTGTGGTGGATGATCATATCCTTGAGACAGTTCTTACTGCTTGTGGAGGCATTGATTGTGTAGACATTGATTGGAATATCCAGTCTTCTTCACATGAANAAGTGGATGTAACCAATTAGGTGTAATATTCAGTAGATGAGGAGGATAAAGAAAGATTTTGAGAAACGATGTGCCACCAATAGTTAGTGATAGCCTTCATATGTTAATATCGTTGCATCTACCCTAAAACGTTACACTTTGGTATGGTTCTATATTGCAAATGTAAAGAATACTCTTGTGCTTTCAAGGTGCTCAAACATATGCCTTTTCCGGATGTTTCATGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	78645	82981	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003867.1	PF01535.15	PPR	335	360	0.045
Glyur000032s00003867.1	PF01535.15	PPR	363	387	0.00053
Glyur000032s00003867.1	PF01535.15	PPR	436	461	0.19
Glyur000032s00003867.1	PF01535.15	PPR	463	493	0.0001
Glyur000032s00003867.1	PF01535.15	PPR	536	561	0.0073
Glyur000032s00003867.1	PF01535.15	PPR	565	593	4.40E-09
Glyur000032s00003867.1	PF01535.15	PPR	638	660	0.75
Glyur000032s00003867.1	PF13041.1	PPR_2	663	711	3.00E-11
Glyur000032s00003867.1	PF01535.15	PPR	738	764	0.0071
Glyur000032s00003867.1	PF01535.15	PPR	766	796	4.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.295
SRR1783600	control	1.334
SRR1783602	moderate drought stress	2.673
SRR1811619	moderate drought stress	2.778

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.420
DRR006520	Root Summer glycyrrhizin high producing strain	4.238
DRR006521	Root Winter glycyrrhizin high producing strain	10.536
DRR006522	Root Winter glycyrrhizin high producing strain	10.475
DRR006523	Root Summer glycyrrhizin low producing strain	6.688
DRR006524	Root Summer glycyrrhizin low producing strain	6.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.125
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.467
SRR2868004	Drought Stress (root)	2.131
SRR2967015	Control (root)	4.289

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.251
SRR9715740	Leaf	5.139
SRR9715741	Leaf	3.047
SRR9715739	Root	0.538
SRR9715742	Root	1.461
SRR9715743	Root	1.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.496
SRR8749028	MeJA induced 9h	14.098
SRR8749029	MeJA induced 9h	8.691
SRR8749030	Uninduced	2.805
SRR8749031	Uninduced	3.228
SRR8749032	Uninduced	4.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.971
SRR8400027	Control - Root	2.717