Gene detail information of Glyur000032s00003863 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31320.1 | 3.00E-48 | LOB domain-containing protein 4 |
| NR | XP_004505337.1 | 7.08E-100 | PREDICTED: LOB domain-containing protein 4-like [Cicer arietinum] |
| Swissprot | tr|Q9SHE9|LBD4_ARATH | 3.00E-66 | LOB domain-containing protein 4 |
| trEMBL | tr|G7JIR8|G7JIR8_MEDTR | 2.00E-95 | LOB domain protein {ECO:0000313|EMBL:AES90058.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 56406 | 60539 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003863.1 | PF03195.9 | DUF260 | 17 | 116 | 3.50E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.192 |
| SRR1783600 | control | 24.160 |
| SRR1783602 | moderate drought stress | 13.613 |
| SRR1811619 | moderate drought stress | 13.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.296 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.881 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.765 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.927 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.117 |
| SRR2868004 | Drought Stress (root) | 28.515 |
| SRR2967015 | Control (root) | 26.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.747 |
| SRR9715740 | Leaf | 0.367 |
| SRR9715741 | Leaf | 0.514 |
| SRR9715739 | Root | 6.467 |
| SRR9715742 | Root | 5.926 |
| SRR9715743 | Root | 6.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.356 |
| SRR8749028 | MeJA induced 9h | 0.104 |
| SRR8749029 | MeJA induced 9h | 0.186 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.055 |
| SRR8400027 | Control - Root | 25.041 |