Gene detail information of Glyur000032s00003858 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30480.1 | 6.00E-89 | D111/G-patch domain-containing protein |
| NR | XP_003607832.1 | 0 | DNA-damage-repair/toleration protein DRT111 [Medicago truncatula] |
| Swissprot | tr|P42698|DR111_ARATH | 7.00E-169 | DNA-damage-repair/toleration protein DRT111, chloroplastic (Precursor) |
| trEMBL | tr|G7JHL2|G7JHL2_MEDTR | 0 | DNA-damage-repair/toleration protein DRT111 {ECO:0000313|EMBL:AES90029.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 25803 | 29823 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003858.1 | PF01585.18 | G-patch | 223 | 260 | 3.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.963 |
| SRR1783600 | control | 8.958 |
| SRR1783602 | moderate drought stress | 9.751 |
| SRR1811619 | moderate drought stress | 9.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.279 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.350 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.203 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.154 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.265 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.853 |
| SRR2868004 | Drought Stress (root) | 22.209 |
| SRR2967015 | Control (root) | 21.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.873 |
| SRR9715740 | Leaf | 14.056 |
| SRR9715741 | Leaf | 13.227 |
| SRR9715739 | Root | 14.707 |
| SRR9715742 | Root | 15.910 |
| SRR9715743 | Root | 14.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.602 |
| SRR8749028 | MeJA induced 9h | 43.513 |
| SRR8749029 | MeJA induced 9h | 53.572 |
| SRR8749030 | Uninduced | 12.809 |
| SRR8749031 | Uninduced | 28.399 |
| SRR8749032 | Uninduced | 41.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.536 |
| SRR8400027 | Control - Root | 21.330 |