Gene detail

Gene detail information of Glyur000032s00003857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26370.1	5.00E-55	antitermination NusB domain-containing protein
NR	XP_007205626.1	5.77E-79	hypothetical protein PRUPE_ppa009156mg [Prunus persica]
COG	YP_001087694.1	6.00E-09	N utilization substance protein B [Clostridium difficile 630]
trEMBL	tr\|M5WJ39\|M5WJ39_PRUPE	2.00E-79	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06825.1}

Sequence

Transcript Sequence

>Glyur000032s00003857.1
AGAGAAGTGGCGATGGCGAATATTTGCAATGCAATCATTATTATCTTCAGCGGCAATGGAGGGAGCCTGGCTTCCCCTGTCTTCACGAACTTCATCCCCTGCAACTCCTTCTAAACCCAACCAACGCTTTTNCCTTCCCTCTCCTTCACTACTAAACCATCAACGTTACTCGTACTCCCCCAAACCCAAAAGCCAGACATCTCGTCGACTTCGGTGCTCTCTCCGCGGCTCCACCTTGGCACTCGACCGTGACGAACCCTCCGTTTCTGGAAAAGCCGACAACTCTTTGGCCGCTTTGCCCAGAATCGACAAAACCGGACGGTTCTGCAGTCCCAGAGCCGCCAGAGAACTTGCTCTGTCCATAATTTATGCCGCGTAAGCTGGCTATGAATTTGACAAGGGAAAATTGTTGGAATATAATCATATGANTTTCGGAGGGCCACCTGTTGTTGTGGAATCGGATGAAGAAGCAAATCAACTTCTGCGGAACATTGAGCAGGAGTCTGCAATTGAAGCAGAAGTCCTTGCAGCTCCTCCAAAGCTGGTATATAGCAAACTGATTTTGAGGTTCACTAGGAAACTATTGGTTGCAGTCACAGATAAATGGGACAGTCATGTCCTTGTTATTAACGAAGTTATCCCACCAAATTGGAAGAATGAACCAGCAGGGAAGATTTTAGAGCTTTCTATTCTCCACTTGGCAATGTCTGAAATAACCGCGCTAGACACAAGACACCAAATCGTCATTAATGAGGCGGTGGATCTNGCTAAACGGTTCTGTGATGGAGCAGCACCTCGTATCATTAATGGCTGTCTACGCACATTTGTCCGAGGCCTGCAGCTTGAGACAGCAGATAATGTGGTTTAGTTGATCTCTGTATACATTGTATGCTTAATGCCTTGGATTGTTGAAAATATTGATTGATTGATTGGTGTGGATTTCAGGAATATCACCGTTGGTGGTTTGATAAGTTGGATATGTTGTAGAATCATTATACTGTAGGTTGGTGCGACTGGCAGTGAGTGGCAGGGTCTGAAGTAGGAATTATGTTTTTTTTTTTTGGTTCAACAAGTAGGGAATTATGTTTGAAAGTGGTAGTTATTACTAGTTGTTAAACTGTTGATGATTTTTCCACAACGGGCTACGNAAATACCAATGAATACGAGCATCGTTTTCACAAAAATTACGGGATTAGATTGACTGGTTTTTTTCTTTTAAATCAATTTAATTCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	19251	23188	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006353 DNA-templated transcription, termination

GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003857.1	PF01029.13	NusB	14	136	3.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.678
SRR1783600	control	16.228
SRR1783602	moderate drought stress	18.067
SRR1811619	moderate drought stress	18.059

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.901
DRR006520	Root Summer glycyrrhizin high producing strain	21.122
DRR006521	Root Winter glycyrrhizin high producing strain	50.692
DRR006522	Root Winter glycyrrhizin high producing strain	48.495
DRR006523	Root Summer glycyrrhizin low producing strain	36.915
DRR006524	Root Summer glycyrrhizin low producing strain	37.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.061
SRR2868004	Drought Stress (root)	7.704
SRR2967015	Control (root)	17.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.094
SRR9715740	Leaf	33.522
SRR9715741	Leaf	24.968
SRR9715739	Root	6.092
SRR9715742	Root	8.143
SRR9715743	Root	7.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.331
SRR8749028	MeJA induced 9h	9.440
SRR8749029	MeJA induced 9h	20.071
SRR8749030	Uninduced	15.452
SRR8749031	Uninduced	15.064
SRR8749032	Uninduced	15.137

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.015
SRR8400027	Control - Root	16.093