Gene detail

Gene detail information of Glyur000031s00004437.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G46480.1	2.00E-52	WUSCHEL related homeobox 4
NR	NP_001241420.1	1.39E-116	uncharacterized protein LOC100781015 [Glycine max]
Swissprot	tr\|Q6X7J9\|WOX4_ARATH	7.00E-65	WUSCHEL-related homeobox 4
trEMBL	tr\|C6TFY4\|C6TFY4_SOYBN	5.00E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G04470.1}

Sequence

Transcript Sequence

>Glyur000031s00004437.1
CTCATTTCCCACTTTGTCCACTTTACTATTGTTCCCTCTCATATCCTCGCTCTATATAATTACCCCATATATCTCACTCACCCCCATCAACCCAATTCCCTCCACCATGGGAAACACGAAGGTGCATCAGTTCACACGTGGATTTTGGGAGCACGAAGTACCCTCCCTCACACTTGGGTACTGCAAACGCTTACGCCCTCTTGCTCCCAAGCTTCCCAACACCACCACCGAAACCACCACCACTACAACTCCTTCTATTCCTAATTTCGACCTCAAGAGCTTCATCAAACCCGAAAGTGGCCCCAGAAAACTCTTACCCTCCGACGATAATAAGANAGATCACCCACCTAATTCACCCCCGGCCCAGGTTGTTGAGACGCATCCGGGAGGGACACGGTGGAACCCGACGCAAGAACAGATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCGAATGCTCAACAGATAGAGCAGATCACAGTTCAGCTTGGCAAGTACGGAAAGATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGCAACAGTACTACTCTTGGACTTTCCCAAACTCCTCCAACTCATCCCACCTTTCATACCATAACTTTGGAGACCACTAGGGGGGAAGTAGTAGAAAGAGATCAAGAAGATAGTCCTTATAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGACCATACCATGTCAATAGGTAAAGAAGAGGAGGAGCATAGAACTTTGGAACTTTTCCCATTGCACCCGGAATTAGGAAGATGAAAGAGAGGGTACTTAAGGGTTTGACTATCCATCATTTTGCTTTGCTTTTGTTCCGAATTAATCCCAGCTAGCTGATTGAAATGAATGTGCGCTTTAATTTGCTTTACTTTTCTTCTTTCTTTTGTATTGGGAAAGAAGAAAGACAAAGTTGTCTCTGATCATCTGTACTAGTAACTCTTCCACTTAATGCTCTATTCCTGACTTTGGAACCAAACCAAAGCGATTTGTCTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00031	530370	531822	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000031s00004437.1	PF00046.24	Homeobox	96	155	1.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	366.416
SRR1783600	control	371.962
SRR1783602	moderate drought stress	157.977
SRR1811619	moderate drought stress	159.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	163.263
DRR006520	Root Summer glycyrrhizin high producing strain	161.596
DRR006521	Root Winter glycyrrhizin high producing strain	0.210
DRR006522	Root Winter glycyrrhizin high producing strain	0.206
DRR006523	Root Summer glycyrrhizin low producing strain	160.806
DRR006524	Root Summer glycyrrhizin low producing strain	160.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.578
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.765

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.309
SRR2868004	Drought Stress (root)	67.640
SRR2967015	Control (root)	91.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.954
SRR9715740	Leaf	22.346
SRR9715741	Leaf	10.537
SRR9715739	Root	58.899
SRR9715742	Root	79.082
SRR9715743	Root	70.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.902
SRR8749028	MeJA induced 9h	0.104
SRR8749029	MeJA induced 9h	0.836
SRR8749030	Uninduced	0.234
SRR8749031	Uninduced	0.094
SRR8749032	Uninduced	0.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	200.352
SRR8400027	Control - Root	248.021