Gene detail information of Glyur000031s00004422 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34160.1 | 8.00E-72 | CYCLIN D3;1 |
| NR | XP_003603091.1 | 6.75E-175 | Cyclin D3-1 [Medicago truncatula] |
| Swissprot | tr|P42753|CCD31_ARATH | 6.00E-91 | Cyclin-D3-1 |
| trEMBL | tr|G7J6Z8|G7J6Z8_MEDTR | 3.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:AFK43823.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 439385 | 441323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004422.1 | PF00134.18 | Cyclin_N | 82 | 207 | 6.40E-29 |
| Glyur000031s00004422.1 | PF02984.14 | Cyclin_C | 210 | 315 | 8.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.248 |
| SRR1783600 | control | 10.554 |
| SRR1783602 | moderate drought stress | 8.006 |
| SRR1811619 | moderate drought stress | 7.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.483 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.887 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.900 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.605 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.069 |
| SRR2868004 | Drought Stress (root) | 11.555 |
| SRR2967015 | Control (root) | 12.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.162 |
| SRR9715740 | Leaf | 0.500 |
| SRR9715741 | Leaf | 0.501 |
| SRR9715739 | Root | 5.809 |
| SRR9715742 | Root | 4.457 |
| SRR9715743 | Root | 4.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.361 |
| SRR8749028 | MeJA induced 9h | 33.912 |
| SRR8749029 | MeJA induced 9h | 22.811 |
| SRR8749030 | Uninduced | 0.894 |
| SRR8749031 | Uninduced | 0.147 |
| SRR8749032 | Uninduced | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.108 |
| SRR8400027 | Control - Root | 16.160 |