Gene detail

Gene detail information of Glyur000031s00004418.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53010.1	7.00E-89	Domain of unknown function (DUF303)
NR	XP_004501807.1	2.67E-171	PREDICTED: probable carbohydrate esterase At4g34215-like [Cicer arietinum]
COG	YP_004775077.1	1.00E-14	hypothetical protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8L9J9\|CAES_ARATH	5.00E-85	Probable carbohydrate esterase At4g34215
trEMBL	tr\|G7JKT8\|G7JKT8_MEDTR	4.00E-159	Carbohydrate esterase plant-like protein {ECO:0000313\|EMBL:AES87604.1}

Sequence

Transcript Sequence

>Glyur000031s00004418.1
CGTTCACGCGGTAATCTAATCAAAAATCATTCTGAATGTTTGAAGAACTAGAGTAGAGACAGAGTGTATGGGAAGCAATTGGCAAATATTATATATATGTCAATATAATTTATTTATTCTTTATTCTTGGAGCTTTGAGTATGGCGCATAAATAATTGTGCGTGGATCAAAGGAGCGTCTCCATCTGAAGTCTGAACCCAAGAATATGCCTTCCTTGTTATTGTTGTTATGTCTGATTCAAGCATGGCCAATGCTGAGGCTACAAGCTGATGATGATAGAAACATATTTATATTGGCCGGACAGAGCAACATGGCTGGTAGGGGAGGCGTGGTAAACGACACGGCCACAGGTATCACCACCTGGGACGGTGTCGTTCCACCCCAGTGCCGTCCCAATCCGTCGATTCTGAAGCTCAACGCGCAGCTGGAGTGGGTGAAAGCGCGTGAACCGCTCCACGAGGACATCGATACAGAGAAAACAAATGGGGTTGGACCCGGAATGGCATTTGCGAACTCGGTGTTGAGCAAACACTCGCGTGGGCTTGGTTTGGTGGGTTTGGTCCCTTGTGCGATCGGTGGCACCAACATAACCCAATGGGAAAAGGGAAAAGAGCTTTACAACCACATGATGAGGAGGGTTAAGGCTTCCTTGCGTGATGATGGTGGCACTATTCGAGCGCTGCTTTGGTATCAAGGGGAGTCTGATACGGTCAATCTAAGTGATGCCCAGTCATACCAAACAAGACTTCACAAGTTCTTCTTGGATGTTCGTGATGATTTGCAGTCTCCATTGCTTCCCATAATCCAGGTGGCATTGGCATCAGGAACAGGCCCTTACATAGAGATTGTAAGNCAAGCACAGCTGGGTATTGACCTCCTGAATTTGAAAACTGTGGACGCTCAGGGGTTGCCCCTTGAGCCCGATGGGCTGCACCTTNCGACCCCGGCCCAGGTTGATCTTGGGAAAATGATGGCTGATGCATTCCTTCAGTTCGTACCCTCTTCCAGCCCAAATATATATAACAATGTTAGTCCAATNCGTAACGGGGCCTCCAGTTACATCAGGTTTTATAAATGTGTGTCAAATATTTATGTGGTCCCCCTGTTCATAACATTTATCACAATAGTGTCCCTAAAGTTCTTCTAGTAGCTTTAATTTGACCCAAAAAAAAAGGTTCTTGTATTAGCTTTTTTTTTAATTGCTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00031	407454	410019	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000031s00004418.1	PF03629.13	DUF303	27	261	2.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.162
SRR1783600	control	4.407
SRR1783602	moderate drought stress	8.167
SRR1811619	moderate drought stress	8.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.437
DRR006520	Root Summer glycyrrhizin high producing strain	6.631
DRR006521	Root Winter glycyrrhizin high producing strain	2.893
DRR006522	Root Winter glycyrrhizin high producing strain	2.687
DRR006523	Root Summer glycyrrhizin low producing strain	7.694
DRR006524	Root Summer glycyrrhizin low producing strain	7.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.540
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.682

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.601
SRR2868004	Drought Stress (root)	26.428
SRR2967015	Control (root)	23.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.207
SRR9715740	Leaf	6.966
SRR9715741	Leaf	22.493
SRR9715739	Root	4.173
SRR9715742	Root	5.960
SRR9715743	Root	5.543

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.490
SRR8749028	MeJA induced 9h	30.145
SRR8749029	MeJA induced 9h	39.585
SRR8749030	Uninduced	33.181
SRR8749031	Uninduced	14.130
SRR8749032	Uninduced	12.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.457
SRR8400027	Control - Root	11.678