Gene detail

Gene detail information of Glyur000031s00004414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37280.1	3.00E-81	MRG family protein
NR	XP_003523982.1	3.22E-171	PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]
trEMBL	tr\|I1JTN2\|I1JTN2_SOYBN	1.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G04530.2}

Sequence

Transcript Sequence

>Glyur000031s00004414.1
CTTCCAGGTGACGGGAGTGAAGAAATTAGGAAGAGACATGTCTGTTGGTTTTGGGGTTTAGGGGGAGAAATTGATGATTGATTACTTCGGAACAGTTATGAAAGCAAAAAGTGAGTGGTTGGGAAGGTGAAGCAGAAGGAGGAAGGGAATCAGATTGCAAGAGGAAGTAACAGAGAAGAAAGAAATCGAGATTGGTGAAAATGGGGAGTCCCAAGACAAGTAACGAGGTTACCGACAATTCCAATAGCAGCAGCAGCAACAGCACTGAGACTGAAACCGAAGACCATATCTCCGATGCTCCCTACGCCGAAGGAGAGAAGGTCCTCGCTTACCACACTACTTGTCTTTATGAAGCCAAGGTCAGGCACATTGAGTACAAGCATAAAGGATGGAGGTTCTTTGTTCACTATCTTGGTTGGAAGAAAAGTTGGGATGAATGGGTTGGTTTGGATCGTTTGATGAAACACACGGAGGAAAATATGCGCCAAAAACATGCCCTTGATGAGAAACATGGCATTGACAAGAATGCAAAGAACCCCCGTGCATCATTGCCTAAATCCAAGACTTTTAACGGAGCAAGAGGCAGGAAACGAAAGAATGAATCTCTGGTTAAGGAAAAACCCGGGGTTCATCCGGATAAGCTTGTCAACATTCAGATTCCACGAACACTAAAGAAGCGATTAGTTGATGATTTTGAATTTATTACTCATCTGGGCAAGCTTGTTAAACTTCCTCGAACTCCTAATGTGAACGACATAATTAAGAATTATTTTGATTACAGATTGAAGAAATGTGACTTGATAGCTGATTCAGTTGAAGAAATTATGAAAGGATTGTGTTGTTACTTTGACAAAGCATTGCCAGTGATGCTCTTGTACCAGAATGAGCGTCAACAGTACCAAGAAGCCTGTCCAAATGATGTTGTTCCTGCTGATATATATGGTGCTGAGCATTTGTTGCGTCTCTTTGTTAAGTTGCCGGAGTTATTGTTCCATGCTAACATTGAAGAGGAGACATTGACAGAACTCCAAACACAATTACTTGACTTTCTAAGGTTCTTGCAAAAAAATCAGAGTACATTTTTCCTTTCTACTTACCATGTCCCAGAAGATATTGAGAACAGCACCAACAAACAAGGTGACTAGGCTTGGGGGACAACATTTGGTTTTGCATTGCACACAATATCACATAGCTTCTGCCGTTATGGAATGCTTGTTATAATTGCAGTTTAGTTACAAATCAAAATGTTGTCAAATTAGATTTGTTAAGTGTTGCTTGTAGCNTTGGGAACCCAACGTTTTTGGGTTCAGGGAGAGTAACCAAAGATCTTTTGAAAGAATATGCTACTGACACTCAGTTTTAAATATCAGTTGTATTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00031	377972	382000	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000031s00004414.1	PF11717.3	Tudor-knot	37	86	1.90E-09
Glyur000031s00004414.1	PF05712.8	MRG	127	297	8.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.980
SRR1783600	control	18.101
SRR1783602	moderate drought stress	13.701
SRR1811619	moderate drought stress	13.593

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.605
DRR006520	Root Summer glycyrrhizin high producing strain	22.092
DRR006521	Root Winter glycyrrhizin high producing strain	12.486
DRR006522	Root Winter glycyrrhizin high producing strain	12.113
DRR006523	Root Summer glycyrrhizin low producing strain	21.549
DRR006524	Root Summer glycyrrhizin low producing strain	21.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.503
SRR2868004	Drought Stress (root)	36.211
SRR2967015	Control (root)	34.326

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.249
SRR9715740	Leaf	12.809
SRR9715741	Leaf	9.748
SRR9715739	Root	2.864
SRR9715742	Root	8.174
SRR9715743	Root	9.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.371
SRR8749028	MeJA induced 9h	15.556
SRR8749029	MeJA induced 9h	9.112
SRR8749030	Uninduced	9.331
SRR8749031	Uninduced	6.201
SRR8749032	Uninduced	4.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.948
SRR8400027	Control - Root	40.842