Gene detail information of Glyur000031s00004413 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24210.1 | 5.00E-45 | F-box family protein |
| NR | AFK47240.1 | 4.59E-97 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9STX3|GID2_ARATH | 2.00E-56 | F-box protein GID2 |
| trEMBL | tr|I3T3Z8|I3T3Z8_MEDTR | 2.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:AFK47240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 372720 | 373253 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004413.1 | PF00646.28 | F-box | 46 | 83 | 0.00015 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.205 |
| SRR1783600 | control | 80.500 |
| SRR1783602 | moderate drought stress | 170.942 |
| SRR1811619 | moderate drought stress | 171.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.472 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 67.803 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 49.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 101.969 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 100.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.988 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 136.051 |
| SRR2868004 | Drought Stress (root) | 136.390 |
| SRR2967015 | Control (root) | 145.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.779 |
| SRR9715740 | Leaf | 33.791 |
| SRR9715741 | Leaf | 31.094 |
| SRR9715739 | Root | 113.023 |
| SRR9715742 | Root | 54.384 |
| SRR9715743 | Root | 61.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.714 |
| SRR8749028 | MeJA induced 9h | 11.077 |
| SRR8749029 | MeJA induced 9h | 9.167 |
| SRR8749030 | Uninduced | 2.384 |
| SRR8749031 | Uninduced | 1.797 |
| SRR8749032 | Uninduced | 3.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 86.980 |
| SRR8400027 | Control - Root | 67.159 |