Gene detail information of Glyur000031s00004404 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43080.1 | 3.00E-104 | Cyclin A3;1 |
| NR | XP_006578041.1 | 0 | PREDICTED: putative cyclin-A3-1-like [Glycine max] |
| Swissprot | tr|Q9FMH5|CCA31_ARATH | 4.00E-136 | Putative cyclin-A3-1 |
| trEMBL | tr|I1JTP0|I1JTP0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G04620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 347926 | 350555 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004404.1 | PF00134.18 | Cyclin_N | 94 | 222 | 2.70E-44 |
| Glyur000031s00004404.1 | PF02984.14 | Cyclin_C | 225 | 347 | 1.30E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.345 |
| SRR1783600 | control | 3.302 |
| SRR1783602 | moderate drought stress | 2.003 |
| SRR1811619 | moderate drought stress | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.720 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.525 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.057 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.970 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.479 |
| SRR2868004 | Drought Stress (root) | 4.464 |
| SRR2967015 | Control (root) | 4.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.556 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.632 |
| SRR9715739 | Root | 0.271 |
| SRR9715742 | Root | 0.416 |
| SRR9715743 | Root | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.075 |
| SRR8749028 | MeJA induced 9h | 4.351 |
| SRR8749029 | MeJA induced 9h | 2.947 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.118 |
| SRR8749032 | Uninduced | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.303 |
| SRR8400027 | Control - Root | 4.431 |