Gene detail information of Glyur000031s00004402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43080.1 | 6.00E-92 | Cyclin A3;1 |
| NR | XP_004501805.1 | 3.24E-163 | PREDICTED: putative cyclin-A3-1-like [Cicer arietinum] |
| Swissprot | tr|Q9FMH5|CCA31_ARATH | 9.00E-120 | Putative cyclin-A3-1 |
| trEMBL | tr|I1JTP1|I1JTP1_SOYBN | 2.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G04630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 342280 | 344396 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004402.1 | PF00134.18 | Cyclin_N | 91 | 219 | 4.90E-44 |
| Glyur000031s00004402.1 | PF02984.14 | Cyclin_C | 253 | 382 | 3.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.906 |
| SRR1783600 | control | 1.958 |
| SRR1783602 | moderate drought stress | 0.740 |
| SRR1811619 | moderate drought stress | 0.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.522 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.247 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.110 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.137 |
| SRR2868004 | Drought Stress (root) | 2.672 |
| SRR2967015 | Control (root) | 2.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.847 |
| SRR9715740 | Leaf | 0.192 |
| SRR9715741 | Leaf | 0.658 |
| SRR9715739 | Root | 0.115 |
| SRR9715742 | Root | 0.284 |
| SRR9715743 | Root | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.338 |
| SRR8749028 | MeJA induced 9h | 2.815 |
| SRR8749029 | MeJA induced 9h | 1.472 |
| SRR8749030 | Uninduced | 0.433 |
| SRR8749031 | Uninduced | 0.627 |
| SRR8749032 | Uninduced | 1.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.336 |
| SRR8400027 | Control - Root | 4.145 |