Gene detail information of Glyur000031s00004396 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59845.1 | 2.00E-21 | Gibberellin-regulated family protein |
| NR | XP_003550315.1 | 1.76E-41 | PREDICTED: snakin-1 [Glycine max] |
| Swissprot | tr|Q948Z4|SNAK1_SOLTU | 1.00E-36 | Snakin-1 (Precursor) |
| trEMBL | tr|C6SVU2|C6SVU2_SOYBN | 1.00E-41 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU13365.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 308669 | 309334 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004396.1 | PF02704.9 | GASA | 24 | 83 | 8.10E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.071 |
| SRR1811619 | moderate drought stress | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.003 |
| SRR2967015 | Control (root) | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.075 |
| SRR9715740 | Leaf | 2.395 |
| SRR9715741 | Leaf | 5.877 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.130 |
| SRR9715743 | Root | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 431.013 |
| SRR8749028 | MeJA induced 9h | 869.692 |
| SRR8749029 | MeJA induced 9h | 232.055 |
| SRR8749030 | Uninduced | 98.444 |
| SRR8749031 | Uninduced | 6.099 |
| SRR8749032 | Uninduced | 15.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.035 |
| SRR8400027 | Control - Root | 0.031 |