Gene detail information of Glyur000031s00004393 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43120.1 | 3.00E-163 | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein |
| NR | XP_003523615.2 | 0 | PREDICTED: uncharacterized protein LOC100777591 [Glycine max] |
| trEMBL | tr|K7KI21|K7KI21_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G04680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 292636 | 294880 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004393.1 | PF13414.1 | TPR_11 | 417 | 486 | 8.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.257 |
| SRR1783600 | control | 0.295 |
| SRR1783602 | moderate drought stress | 0.516 |
| SRR1811619 | moderate drought stress | 0.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.603 |
| SRR2868004 | Drought Stress (root) | 2.238 |
| SRR2967015 | Control (root) | 1.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.063 |
| SRR9715742 | Root | 0.210 |
| SRR9715743 | Root | 0.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.985 |
| SRR8749028 | MeJA induced 9h | 22.406 |
| SRR8749029 | MeJA induced 9h | 8.500 |
| SRR8749030 | Uninduced | 10.391 |
| SRR8749031 | Uninduced | 1.324 |
| SRR8749032 | Uninduced | 1.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.116 |
| SRR8400027 | Control - Root | 0.508 |