Gene detail information of Glyur000031s00004390 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27700.1 | 5.00E-61 | Syntaxin/t-SNARE family protein |
| NR | XP_004501533.1 | 0 | PREDICTED: uncharacterized protein LOC101504819 [Cicer arietinum] |
| trEMBL | tr|C6TH13|C6TH13_SOYBN | 1.00E-178 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU21115.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 275371 | 278390 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004390.1 | PF09177.6 | Syntaxin-6_N | 11 | 103 | 2.00E-22 |
| Glyur000031s00004390.2 | PF09177.6 | Syntaxin-6_N | 11 | 103 | 1.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.290 |
| SRR1783600 | control | 4.308 |
| SRR1783602 | moderate drought stress | 6.377 |
| SRR1811619 | moderate drought stress | 6.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.949 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.973 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.885 |
| SRR2868004 | Drought Stress (root) | 21.912 |
| SRR2967015 | Control (root) | 23.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.086 |
| SRR9715740 | Leaf | 27.904 |
| SRR9715741 | Leaf | 31.991 |
| SRR9715739 | Root | 19.292 |
| SRR9715742 | Root | 35.776 |
| SRR9715743 | Root | 30.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.251 |
| SRR8749028 | MeJA induced 9h | 26.467 |
| SRR8749029 | MeJA induced 9h | 28.970 |
| SRR8749030 | Uninduced | 54.150 |
| SRR8749031 | Uninduced | 89.437 |
| SRR8749032 | Uninduced | 49.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.993 |
| SRR8400027 | Control - Root | 21.428 |