Gene detail

Gene detail information of Glyur000031s00004376

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01400.1	4.00E-146	ARM repeat superfamily protein
NR	KDP41625.1	0	hypothetical protein JCGZ_16032 [Jatropha curcas]
Swissprot	tr\|O22193\|PUB4_ARATH	4.00E-80	U-box domain-containing protein 4
trEMBL	tr\|A0A067LAU8\|A0A067LAU8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP41625.1}

Sequence

Transcript Sequence

>Glyur000031s00004376.1
GCGGTTTTGATGACAGTTTTAGGCTTTAACGAGTCTAAGGTGTTTCGAGGCTATTAAAGAATTATATTATTCGAAATCATGACATAAACANTTCGTCTCCTAATCTAAATTTATATTTATGTTTATTTATAAAAAAAAGACAGGATGTAACTTGTGTACGAGAGTAGAAGCGAAACAGCGCTAGGGAGCAGAAACTTGTCTATCATTTTTTTTTTCTTCTATTGTTGGTGAATGAAACATTCGTATTTTAAATTCGTTTTTGTTGTCCCACGTTAGTTAGCGAAAGAATAGGGAACTTGACCGTAGCCAAGAAGNAAACAACAACAATAATANTAAGAGGAGACAGAAGAGCAANCGAAAGCCAAAACAATGGGAAAACTTCATGATCACCGGCCCCGGGGCGTGGCCTGACCTGTACCGATTCCCATCATTGATCCAACCATGTGCGCGCGGGCCGACCCAGCAGTAACACACATTGATTTAACTACTCCAATATTCAAGAAGAACCAAAACATTAGTTAATTATATCCCCCCGGAGACCTTAATTAACTACCAAAACTCACCCTTCAAAACGAAATGAAAATGAGTGACTCAGAGCTTCGAAAAACTCTAACCATCTTTTGTTTTCAGTTTCTACTAAGCACGCGTTTAAAGAGAAAAGAAGAGCCCCATCGCACGTGCTGGCTNCTTTTCCCGGCTCGGATTCGGTACGGTCAACATTCAATATGTGCTATACGCCTGTACCCTGCCATACATTCGGGCTTTCTTTCGCAACCCAATCCTTTTTTCCTTTCCCCTCTCTCTCTCTCTCTCTCCCCAACTAAACCAATTGGATATCTTCAATTCTGATATATAGAGACTATTATATATTGGGGAATGGGAACAGATATTCCGGCGACGAATTACACTTACATGGGAGGAGGAGGAGGAGGAGGGAACTTCAGGGATGATTCCTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCCCCACCGCTTCTTCCCAAACCCGACGCCTCCTCATGGCCTGTGCTTCCGATTACAACTCCGACGAACTCATTCATCAGTTGGTTCACGATCTCGAGTCCTGTTCCATTGACGAGCAAAAACAAGCCACCATGGAAATCAGGTTATTAGCCAAGAACAAATCAGAAAATCGCCTCAAAATCGCGAAAGCCGGGGCCATCAAACCGTTAATTTCGCTTTTGTCGTCGCCGGAGACGGACCTTCAGTTGCAGGAGTACGTGGTAACTGCGATTTTGAATCTCTCGCTGTGCGACGAGAACAAAGAGGTGATAGCCTCTTCGGGAGCGATTAAGCCTCTGGTTGGAGCACTGAAAACAGGGACTCCAACAGCGAAGGAGAACGCGGCGTGTGCTCTGCTCCGTCTCTCGCAGACGGAGGAGAACAAGGCGGCGATCGGAAGGGCGGGAGCAATTCCGGCGCTGGTGAGCCTTCTAGAGAACGGAGGTTCCCGGGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGTTCGGCGAAGAACAAGGAGAACAAGGTGAGGGCGGTCAGAGCGGGGGTAATGAGGCCGTTGGTGGAGCTGATGGCGGATTTGGGATCGAGCAATATGGTTGATAAGTCGGCGTATGTTTTAAGCGTGCTGGTGTCGCTTGGGGAGGCGAGGGCGGCGTTGGTGGAGGAAGGAGGGATTCCGGTGCTGGTGGAGATGGTGGAGGTTGGGTCGCAGAGACAGAAGGAAATCGCGGCGGTTATTCTGTTACAGATTTGCGAGGACAGTGTGGTGTACCGTACTATGGTGTGTCGCGAAGGAGCCATTCCTCCCTTGGTCGCTTTGTCCCAATCCGGCACCAATCGCGCCAAACAAAAGGCGGAGACACTAATAGAGCTTCTNCGGCAACCAAGATCCGGCAACGCCGCAGCACGTACCTCACAAATGTCAGCATAAACCCTACCNGGGCATCCTTAATTTTGTGCCCACCAATGTCCTCCAACAATCTAACAGTGATATTGTTAAAGCAGCATATCCATTCCCAAAGAGAGACACAAGCATCACTTGTAAATACCTTCAATTCGTAACGAAGAAGCTTTGTAACTTGTGATATAAATGATGCCAGCTTGGTCTCTACTTTCTTTTGCTTTGTCTTTCAGGTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00031	209400	212128	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000031s00004376.1	PF00514.18	Arm	95	135	1.30E-06
Glyur000031s00004376.1	PF00514.18	Arm	137	176	6.30E-06
Glyur000031s00004376.1	PF00514.18	Arm	179	218	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.468
SRR1783600	control	0.457
SRR1783602	moderate drought stress	0.663
SRR1811619	moderate drought stress	0.647

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.998
DRR006520	Root Summer glycyrrhizin high producing strain	2.083
DRR006521	Root Winter glycyrrhizin high producing strain	3.492
DRR006522	Root Winter glycyrrhizin high producing strain	3.215
DRR006523	Root Summer glycyrrhizin low producing strain	1.222
DRR006524	Root Summer glycyrrhizin low producing strain	1.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.195

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.721
SRR2868004	Drought Stress (root)	13.503
SRR2967015	Control (root)	17.728

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.272
SRR9715740	Leaf	2.124
SRR9715741	Leaf	3.084
SRR9715739	Root	1.137
SRR9715742	Root	0.962
SRR9715743	Root	0.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.388
SRR8749028	MeJA induced 9h	0.249
SRR8749029	MeJA induced 9h	0.393
SRR8749030	Uninduced	0.832
SRR8749031	Uninduced	0.576
SRR8749032	Uninduced	0.841

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.352
SRR8400027	Control - Root	4.378