Gene detail information of Glyur000031s00004375


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27770.10autoinhibited Ca2+-ATPase 1
NRXP_004501521.10PREDICTED: calcium-transporting ATPase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_501831.14.00E-162calcium-translocating P-type ATPase, PMCA-type [Methanospirillum hungatei JF-1]
Swissprottr|Q37145|ACA1_ARATH0Calcium-transporting ATPase 1, chloroplastic (Precursor)
trEMBLtr|D3YBB1|D3YBB1_TRIRP0Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00031198398204472-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0070588  calcium ion transmembrane transport


cellular_component

GO:0016020  membrane

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0005388  calcium-transporting ATPase activity

GO:0005516  calmodulin binding

GO:0005524  ATP binding

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000031s00004375.1PF12515.3CaATP_NAI4513.00E-21
Glyur000031s00004375.1PF00690.21Cation_ATPase_N1191861.40E-10
Glyur000031s00004375.1PF00122.15E1-E2_ATPase2064463.80E-60
Glyur000031s00004375.1PF00702.21Hydrolase4517696.70E-23
Glyur000031s00004375.1PF00689.16Cation_ATPase_C84010142.10E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.753
SRR1783600control10.772
SRR1783602moderate drought stress8.832
SRR1811619moderate drought stress8.804

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.425
DRR006520Root Summer glycyrrhizin high producing strain15.633
DRR006521Root Winter glycyrrhizin high producing strain11.347
DRR006522Root Winter glycyrrhizin high producing strain11.085
DRR006523Root Summer glycyrrhizin low producing strain16.166
DRR006524Root Summer glycyrrhizin low producing strain16.104
DRR006525Leaf Summer glycyrrhizin high producing strain11.819
DRR006526Leaf Summer glycyrrhizin high producing strain11.621

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)49.336
SRR2868004Drought Stress (root)41.770
SRR2967015Control (root)47.457

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf24.382
SRR9715740Leaf36.887
SRR9715741Leaf24.977
SRR9715739Root4.461
SRR9715742Root23.814
SRR9715743Root22.847

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.202
SRR8749028MeJA induced 9h7.128
SRR8749029MeJA induced 9h2.946
SRR8749030Uninduced2.067
SRR8749031Uninduced0.512
SRR8749032Uninduced0.748

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root25.300
SRR8400027Control - Root26.078

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved