Gene detail information of Glyur000031s00004372 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27760.3 | 6.00E-135 | interferon-related developmental regulator family protein / IFRD protein family |
| NR | XP_007136755.1 | 0 | hypothetical protein PHAVU_009G071500g [Phaseolus vulgaris] |
| trEMBL | tr|V7AT55|V7AT55_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08749.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 174658 | 178861 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004372.1 | PF05004.8 | IFRD | 16 | 342 | 2.90E-60 |
| Glyur000031s00004372.1 | PF04836.7 | IFRD_C | 387 | 437 | 1.60E-07 |
| Glyur000031s00004372.2 | PF05004.8 | IFRD | 16 | 334 | 6.20E-63 |
| Glyur000031s00004372.2 | PF04836.7 | IFRD_C | 379 | 429 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.821 |
| SRR1783600 | control | 29.882 |
| SRR1783602 | moderate drought stress | 33.767 |
| SRR1811619 | moderate drought stress | 33.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 69.279 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 68.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.642 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.039 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.308 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 122.783 |
| SRR2868004 | Drought Stress (root) | 127.288 |
| SRR2967015 | Control (root) | 96.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 103.351 |
| SRR9715740 | Leaf | 136.290 |
| SRR9715741 | Leaf | 137.676 |
| SRR9715739 | Root | 19.424 |
| SRR9715742 | Root | 44.514 |
| SRR9715743 | Root | 41.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.034 |
| SRR8749028 | MeJA induced 9h | 142.987 |
| SRR8749029 | MeJA induced 9h | 152.608 |
| SRR8749030 | Uninduced | 230.026 |
| SRR8749031 | Uninduced | 353.214 |
| SRR8749032 | Uninduced | 231.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 117.371 |
| SRR8400027 | Control - Root | 127.455 |