Gene detail information of Glyur000031s00004354 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10130.1 | 6.00E-13 | endoplasmic reticulum-type calcium-transporting ATPase 3 |
| NR | XP_004501511.1 | 1.36E-14 | PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Cicer arietinum] |
| Swissprot | tr|Q9SY55|ECA3_ARATH | 5.00E-14 | Calcium-transporting ATPase 3, endoplasmic reticulum-type |
| trEMBL | tr|K7KI34|K7KI34_SOYBN | 2.00E-14 | Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 108975 | 110413 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05853 | ATP2A | EC:3.6.3.8 | Calcium signaling pathway | map04020 |
| cGMP - PKG signaling pathway | map04022 | |||
| Pancreatic secretion | map04972 | |||
| Alzheimer's disease | map05010 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004354.1 | PF00690.21 | Cation_ATPase_N | 98 | 133 | 0.00024 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.200 |
| SRR1783600 | control | 12.501 |
| SRR1783602 | moderate drought stress | 9.501 |
| SRR1811619 | moderate drought stress | 8.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.258 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.465 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.232 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.981 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.637 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.441 |
| SRR2868004 | Drought Stress (root) | 31.041 |
| SRR2967015 | Control (root) | 33.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.441 |
| SRR9715740 | Leaf | 4.365 |
| SRR9715741 | Leaf | 6.400 |
| SRR9715739 | Root | 4.520 |
| SRR9715742 | Root | 19.913 |
| SRR9715743 | Root | 13.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.377 |
| SRR8749028 | MeJA induced 9h | 27.176 |
| SRR8749029 | MeJA induced 9h | 2.948 |
| SRR8749030 | Uninduced | 1.496 |
| SRR8749031 | Uninduced | 0.717 |
| SRR8749032 | Uninduced | 0.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.965 |
| SRR8400027 | Control - Root | 38.248 |