Gene detail information of Glyur000031s00004349 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27480.1 | 3.00E-147 | alpha/beta-Hydrolases superfamily protein |
| NR | KEH35834.1 | 0 | lecithin:cholesterol acyltransferase family protein [Medicago truncatula] |
| COG | YP_002774995.1 | 1.00E-14 | esterase [Brevibacillus brevis NBRC 100599] |
| Swissprot | tr|Q9FZI8|LCAT1_ARATH | 0 | Lecithin-cholesterol acyltransferase-like 1 |
| trEMBL | tr|A0A072V1F9|A0A072V1F9_MEDTR | 0 | Lecithin:cholesterol acyltransferase family protein {ECO:0000313|EMBL:KEH35834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 72289 | 74449 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06129 | LYPLA3 | EC:3.1.1.5 | Glycerophospholipid metabolism | map00564 |
| Lysosome | map04142 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004349.1 | PF02450.10 | LCAT | 82 | 416 | 2.70E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.082 |
| SRR1783600 | control | 1.065 |
| SRR1783602 | moderate drought stress | 2.292 |
| SRR1811619 | moderate drought stress | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.101 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.861 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.503 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.294 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 78.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.314 |
| SRR2868004 | Drought Stress (root) | 4.664 |
| SRR2967015 | Control (root) | 4.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 63.629 |
| SRR9715740 | Leaf | 103.606 |
| SRR9715741 | Leaf | 48.727 |
| SRR9715739 | Root | 1.703 |
| SRR9715742 | Root | 1.417 |
| SRR9715743 | Root | 1.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.409 |
| SRR8749028 | MeJA induced 9h | 5.444 |
| SRR8749029 | MeJA induced 9h | 1.103 |
| SRR8749030 | Uninduced | 1.593 |
| SRR8749031 | Uninduced | 0.146 |
| SRR8749032 | Uninduced | 0.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.448 |
| SRR8400027 | Control - Root | 3.647 |