Gene detail

Gene detail information of Glyur000030s00002362

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein
NR	XP_003637602.1	Protein kinase C beta type [Medicago truncatula]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|G7ZZV2\|G7ZZV2_MEDTR	Protein kinase C beta type {ECO:0000313\|EMBL:AES84740.1}

Sequence

Transcript Sequence

>Glyur000030s00002362.1
ATGAAGCTTGTGGTTCGTGTAATTGAGGCAAAAAACTTGGTGGCCCCGGATTCCAATGGNTTGAGTGATTTGTACGTGCGGTTACAGTTGGGAAAACAGAAGTTCAAGACGAAGGTGATCAAGAAGAACTTGGAACCAAAGTGGGATGAACAGTTTTGTTTTTGGGTTGACGACCTTAAAGGAAAGCTTGTCGTCTCTGTCATGGATGAGGACAAGTTCTTCAATCATGACTTGGTGGGGCGGATTAAAGTCCCAATCTCACTTGTTTTTGATGAGGAAATCAAATCCCTTGGCAATGCATGGTATACTTTGAGACCCAAAAACAAAAAGTCCAAGAATAAGGACAAGGAATGTGGTGAGATTTACTTGAGTATTTCTCTTAACCAAAATAATGCATCTATGGAGTCAAATGGTGCTGGTGACCAGTCATTACATCCAAGAAAATACGCTGATGCAATTGCTGATTCTCCTTCAACATCTTTCAATGGCCGTTCAAACTCATCTTCTCCAACAAGGGATGAAATTGCATTTTCTAAGGATGAGAAATCTGCTTCGCAAAAATCACTTGCTGGCCGAATTGCTCAAATTTTTAATAAAGGTTCAGATATGTCTTCAATTTCATCTAGTAGAAGCATGGAATTGGACCAACCTGAAACTGATAAAGCTGAAGTCGGTGAGATCAAGACTGAGGATCAGTCCTCTAATGACACTTTTGAAGAAGCTGTGAGAAAAATGCAGTCTGCAGATCAAGGAAGTGAAATTCCTAGCAATTTACCTGGAGGGGTGGTTATAGATCAATTATATATTATTGCACCAGAAGACTTGAATGCATTACTATTTTCACCCGATTCTAATTTCCCCAAGCAAGCAGCAGATGTACAGGGTACTACAGAACTACAATTGGGTCCTTGGAAGTTAGAGAGTGGCAATGAGAGCTTGAAAAGATCACTTACTTACATCAAGGCTCCCACTAAATTAATCAAGGCTGTCAAAGGCTATGAGGAACAGACATATTTAAAAGCTGATGGGAGGAACTTTGCTGTTCTGGGTAGTGTTAGCACTCCAGATGTTATGTATGGCAGCACCTTCAGGGCAGAAGTACTTTATGTGATTACACCTGGGCCAGAGTTGCCATCAGGAGAACAGTGTTCACGTCTGGTGATATCATGGCGAATGAATTTCTTACAGAGCACCATGATGAAAGGAATGATAGAAAATGGAGCTAGGCAAGGTATGAAGGAAGCTTTCGATCAGTATGCCGTTTTGTTATGTCAGACAGTTAAGCCTGTTGACTCAAAGGACCTTGGTTCCAGTAAGGAACAAGCTTTGGCATCATTACAGGCAGAGNCCCAGTCAGATTGGAAGCTGGCAGTGCAGTATTTTGCTAATTTCACAACCATCTCAACTTTCTTAATGGGCTTGTACGTTCTTGTNCATATTTGGCTGGCTGCCCCTGNCATGATTCAAGGGCTTGAGTTTGTTGGGCTTGACTTGCCAGATTCACTTGGTGAATTTGTTGTTTGTGCCGTCTTGGTTCTTCAAAGCGAACGAGTGCTGAGTTTAATCTCGNGTTTCATGCATGCCAGAGCACAAAAGGGTAGTGATCATGGAATTAAAGCACAAGGAGATGGATGGCTGCTAACTGTGGCCTTAATTGAAGGAACTAATTTGGCGACTGTTGATTCTAGTGGCTGCTGTGATNCATATGTTGTGTTTACTTGCAATGGGAAAACAAGAACCAGCTCAATCAAGTTCAAGAAATCTGATCCTTTATGGAATGAAATATTTGAATTTGATGCGATGGATGACCCTCCTTCTGTNCTGGATGTCGATGTTTATGATTTTGATGGACCCTTTGATGAAGTTGCATCTCTAGGACATGCTGAAATCAATTTCCTTAAAACAAACATTTCAGATCTTGCTGATATATGGATTTCTCTTGAAGGAAAGTTAGCTCTGGCATGTCAGTCTAAGTTNCACTTAAGAATTTTCTTGGACAACACTAGAGGTGGGAATGTTGTGAGACACTACTTAAGTAAAATGGAGAAAGAGGTGGGGAAGAAGATTAATTTACGGTCTCCCCAAACNAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGGTGCAGTTGTTCTGTTATGTGATGCTGAAAGCAGTGGGCCGTCTATTTGTTTCAGCCAGAATAATTGGATTTCATGCAAATTTGTTTGGACACAAGACAAAATTCTTTTTGCTTTGGGAGGACATTGAAGACATCCATGGGAGAGGTGTGGACGCAAGGCATGGTGCAAAAACACAAGATGAACAAGGCAGACTGAAGTTCCATTACCAGTCCTTTGTGTCTTTCAACGTTGCACACAGGACTATCATGGCCCTCTGGAAGGCCAGATCCTTGACCCCTGAGCAGAAGGTCCAATTAGTTGAAGACGACCCTGAAACCAAAANCCTTAGCAGTGAAGAGAGTGGGTCATTCCTTGGCATGGATGATGTTAGCATGTCTGAGGTTCATTCTTGTACTCTTCCATTTCCTGCCAGTTTCCTTATGGAGCTTTTCAGTGGGGGTGAGTTGGACCGCAGGGTCATGGAAAAATCTGGTTGTGTTAATTATTCTCATACCCCTTGGGTATCTGAGAACAGTGATGTCTATGAGAGGGCAGTATATTACAAATTTGAGAAGCGTATTTCACGTTATAAAGTCGAAGTAACAAGTACTCAGCAAAGATCTCCTTTGGATGGAAAGGGTTGGCTTTTGGAAGAGGTTATGAACTTCCATGGAGTTCCTCTTGGTGATTATTTCAATCTGCACCTTCGCTATCAAATTGAGGATTTACCCCAAAAGGCAAAGGGATGTAAAGTACAGGTATTGTTTGGAATTGAATGGCTGAAAAGTACAAAACATCACAAAAGGATTACAAAGAACATCCTAAAAAATCTACAAGAACGTTTAAAGCTGACCTTCAGTATAGTTGAGAAGGAATTTTTGGCAAAATAGGGAATGAATCATACTGAATTTGACCTTTGTACAATAGTGAAGCTTAGCTGATATTCTCACAGCATCACTGCACACTTGTTTGCATCACAATCCTAACTTAACTAATACCGGTGGAACAAACTTGCTAGTGCTGTTATCTGCTGTCATCTCCTGATCTGAACGTTGTATATATTACTTCTTTTCTTTTAATGGCGATAAATCGCAGCTATAATGATGCTGATTTGCTTCCAAAGTTTGTTCTTCAAGCCAGATTACCGACTGAAGATGTTACTGTTATGTTGTAAATGACAAGTTGTGACTCTTGCAGAAGATACTCACATTGTATCAGCAGTTACTAGCAATCCAAATTATGGGTTTGTTGTGTATTGCCACACCATTTAGATGATAAGTTGACATCTTGTTAACAAGGGTCCTGTCTGTTGTATCATAGCTTGATAGCTNCTGTTGTCTTTGCTTCCAAAGTATAGGTAATCGTGAAATAGAAGTTTTGACAGGTATT

Protein Sequence

>Glyur000030s00002362.1
MKLVVRVIEAKNLVAPDSNGLSDLYVRLQLGKQKFKTKVIKKNLEPKWDEQFCFWVDDLKGKLVVSVMDEDKFFNHDLVGRIKVPISLVFDEEIKSLGNAWYTLRPKNKKSKNKDKECGEIYLSISLNQNNASMESNGAGDQSLHPRKYADAIADSPSTSFNGRSNSSSPTRDEIAFSKDEKSASQKSLAGRIAQIFNKGSDMSSISSSRSMELDQPETDKAEVGEIKTEDQSSNDTFEEAVRKMQSADQGSEIPSNLPGGVVIDQLYIIAPEDLNALLFSPDSNFPKQAADVQGTTELQLGPWKLESGNESLKRSLTYIKAPTKLIKAVKGYEEQTYLKADGRNFAVLGSVSTPDVMYGSTFRAEVLYVITPGPELPSGEQCSRLVISWRMNFLQSTMMKGMIENGARQGMKEAFDQYAVLLCQTVKPVDSKDLGSSKEQALASLQAEXQSDWKLAVQYFANFTTISTFLMGLYVLVHIWLAAPXMIQGLEFVGLDLPDSLGEFVVCAVLVLQSERVLSLISXFMHARAQKGSDHGIKAQGDGWLLTVALIEGTNLATVDSSGCCDXYVVFTCNGKTRTSSIKFKKSDPLWNEIFEFDAMDDPPSVLDVDVYDFDGPFDEVASLGHAEINFLKTNISDLADIWISLEGKLALACQSKXHLRIFLDNTRGGNVVRHYLSKMEKEVGKKINLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMPLQVQLFCYVMLKAVGRLFVSARIIGFHANLFGHKTKFFLLWEDIEDIHGRGVDARHGAKTQDEQGRLKFHYQSFVSFNVAHRTIMALWKARSLTPEQKVQLVEDDPETKXLSSEESGSFLGMDDVSMSEVHSCTLPFPASFLMELFSGGELDRRVMEKSGCVNYSHTPWVSENSDVYERAVYYKFEKRISRYKVEVTSTQQRSPLDGKGWLLEEVMNFHGVPLGDYFNLHLRYQIEDLPQKAKGCKVQVLFGIEWLKSTKHHKRITKNILKNLQERLKLTFSIVEKEFLAK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	518745	526242	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002362.1	PF00168.25	C2	3	82	1.40E-21
Glyur000030s00002362.1	PF00168.25	C2	547	618	2.80E-11
Glyur000030s00002362.1	PF02893.15	GRAM	699	772	3.60E-11
Glyur000030s00002362.2	PF00168.25	C2	3	82	1.40E-21
Glyur000030s00002362.2	PF00168.25	C2	547	618	2.70E-11
Glyur000030s00002362.2	PF02893.15	GRAM	699	760	4.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.610
SRR1783600	control	4.589
SRR1783602	moderate drought stress	4.385
SRR1811619	moderate drought stress	4.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.686
DRR006520	Root Summer glycyrrhizin high producing strain	3.598
DRR006521	Root Winter glycyrrhizin high producing strain	2.182
DRR006522	Root Winter glycyrrhizin high producing strain	1.930
DRR006523	Root Summer glycyrrhizin low producing strain	2.075
DRR006524	Root Summer glycyrrhizin low producing strain	2.081
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.014
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.358
SRR2868004	Drought Stress (root)	7.218
SRR2967015	Control (root)	7.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.475
SRR9715740	Leaf	2.777
SRR9715741	Leaf	1.877
SRR9715739	Root	1.331
SRR9715742	Root	3.820
SRR9715743	Root	3.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.020
SRR8749028	MeJA induced 9h	0.435
SRR8749029	MeJA induced 9h	0.031
SRR8749030	Uninduced	0.017
SRR8749031	Uninduced	0.126
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.595
SRR8400027	Control - Root	13.639