Gene detail information of Glyur000030s00002359 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47800.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_006600279.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At5g47800-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9FIK1|Y5780_ARATH | 0 | BTB/POZ domain-containing protein At5g47800 |
| trEMBL | tr|K7MJ96|K7MJ96_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G00840.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 507576 | 512879 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002359.1 | PF03000.9 | NPH3 | 200 | 453 | 5.90E-84 |
| Glyur000030s00002359.2 | PF03000.9 | NPH3 | 198 | 451 | 5.90E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.233 |
| SRR1783600 | control | 4.474 |
| SRR1783602 | moderate drought stress | 5.085 |
| SRR1811619 | moderate drought stress | 5.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.283 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.249 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.975 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.430 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.458 |
| SRR2868004 | Drought Stress (root) | 12.818 |
| SRR2967015 | Control (root) | 13.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.477 |
| SRR9715740 | Leaf | 3.690 |
| SRR9715741 | Leaf | 4.112 |
| SRR9715739 | Root | 0.685 |
| SRR9715742 | Root | 6.286 |
| SRR9715743 | Root | 4.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.487 |
| SRR8749028 | MeJA induced 9h | 1.383 |
| SRR8749029 | MeJA induced 9h | 1.022 |
| SRR8749030 | Uninduced | 0.975 |
| SRR8749031 | Uninduced | 0.995 |
| SRR8749032 | Uninduced | 0.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.062 |
| SRR8400027 | Control - Root | 14.435 |