Gene detail information of Glyur000030s00002358 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26570.1 | 1.00E-108 | calcineurin B-like 3 |
| NR | XP_007154070.1 | 3.59E-145 | hypothetical protein PHAVU_003G088500g [Phaseolus vulgaris] |
| Swissprot | tr|Q75LU8|CNBL3_ORYSJ | 6.00E-139 | Calcineurin B-like protein 3 |
| trEMBL | tr|B0I559|B0I559_PHAVU | 1.00E-145 | Uncharacterized protein {ECO:0000313|EMBL:ESW26064.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 499662 | 505101 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002358.1 | PF13833.1 | EF-hand_8 | 86 | 134 | 1.30E-08 |
| Glyur000030s00002358.1 | PF13499.1 | EF-hand_7 | 149 | 214 | 2.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.589 |
| SRR1783600 | control | 8.401 |
| SRR1783602 | moderate drought stress | 8.322 |
| SRR1811619 | moderate drought stress | 7.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.320 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.978 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.808 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.603 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.086 |
| SRR2868004 | Drought Stress (root) | 33.350 |
| SRR2967015 | Control (root) | 33.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.565 |
| SRR9715740 | Leaf | 32.185 |
| SRR9715741 | Leaf | 30.294 |
| SRR9715739 | Root | 7.032 |
| SRR9715742 | Root | 14.894 |
| SRR9715743 | Root | 14.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.944 |
| SRR8749028 | MeJA induced 9h | 11.541 |
| SRR8749029 | MeJA induced 9h | 9.408 |
| SRR8749030 | Uninduced | 13.529 |
| SRR8749031 | Uninduced | 9.891 |
| SRR8749032 | Uninduced | 7.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.124 |
| SRR8400027 | Control - Root | 37.787 |