Gene detail

Gene detail information of Glyur000030s00002356.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17180.1	0	O-Glycosyl hydrolases family 17 protein
NR	XP_003528714.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 5-like isoform X1 [Glycine max]
COG	YP_004788253.1	3.00E-105	6-phosphofructokinase [Muricauda ruestringensis DSM 13258]
Swissprot	tr\|Q9FIK0\|PFKA2_ARATH	0	ATP-dependent 6-phosphofructokinase 2 {ECO:0000255\|HAMAP-Rule:MF_03186}
trEMBL	tr\|I1KNM8\|I1KNM8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G39950.1}

Sequence

Transcript Sequence

>Glyur000030s00002356.1
CTAATTAATAGGCATAAGCAGTTAACACAGTAACTGAATGTGCTACTGCTATAGCAGCAGCTCCCAATTGGTTCAGCATTCTGTGTGGCGCAGAATCTGTGATGAGTAGTGGTGGTTAAAGTAGTGTTTGTTTGTTTTTTGTATCAAAAAAAAAAAGTAGTGTTTGTTTTTGTTAACCTTAACCAACAAATTAAAGCAGAATGTTACAGCCAAGGTTGGAGGTTGGTGGTATTTTGGNGTGGATGATATTGTTGGGGTGGTGGTGGAGGTGGGTTCCGGTGGGTACGGAAGCTGCAATAGGGGTGAACTGGGGAACGGTTTCATTCCGGAAGTTGAAGCCTTCCACGGTGGTTGATCTGTTGAGAGACAACAAGATTGCAAAAGTGAAGCTTTTTGAGGCAGAGCCGGAAGTGCTTAAGGCCCTGATGGGGAGTGGGATTCAGGTGATGGTTGGGATCCCCAATGAGATGTTGCCACTCTTGAGCTCTTCCCCTGCCGCCGCTGATTTGTGGCTTCGCCAGAATGTTTCTGCTTACATCGCCAAACACGGTGCTGATATCAGGTATGTTGCTGTTGGAAATGAGCCATTCCTGAAGAGTTACAATGGTCAATTTCAGAACCTGGTGATGCCTGCGGTGCTCAATCTACANCAGTCTTTAGTGAAAGCAAACCTTGCTGGTTACATAAAACTGGTTGTCCCCTGCAATGCAGATGTGTATGAGTCCTCAATTCCCTCACAAGGTGCATTCCGTCCTGATCTCACCCAAATCATGACTCAGCTGCTTCAGTTCCTCAACTCAAATGGTGCCCCTTTCATTGTCAATATCTACCCTTTCCTCAGCCTCTATGATGATGGAGATTTCCCACAGGACTATGCATTCTTTGAGGGAACTACTCATCCTGTCACAGATGNTTCCAATGTTTATACCAATGCATTTGATGGAAACTATGACACCTTAGTTGCAGCCCTCAGTAAACTTGGGTATGGCCAGATGCCTATAGCTATTGGTGAAATTGGGTGGCCTTCAGATGGAGCCATTGGTGCAAATGTCACTGCAGCAAAGGTTTTCAACCAAGGCCTCATCAATCACGTTCTTGGTAACAAAGGGACCCCTTTGAGGCCAGGTGCTCCTCCTATGGATGTTTATATCTTCAGTCTTCTTGATGAAGGAGCAAAGAGCATACTTCCAGGGAGCTTTGAAAGACACTGGGGGATATTCACCTTTGATGGGCAAGCTAAGTATCCATTGAACCTTGGCCTTGGAAACAAGGAATTGAAGAATGCAAAGAACGTTCAGTATCTTCCATCTAGATGGTGCGTGGCAAGCCCCTCCAGTGATATGAGTAATGTGGCAAACCANATGAGGATTGCATGCAGTGTTGCTGATTGCACCACGCTTAACTATGGTGGTTCGTGCAATGGGATTGGGGAGAAGGGTAATGTCTCGTATGCTTTTAACAGTTACTATCAACTTCAAATGCAAGACTCGAGAAGCTGCAATTTTGATGGGCTTGGTATGGTTACCTCTCGAGACCCTTCGGTTGGGGAATGTCGTTTTCCTGTGGGAGTTAAAGATAAGGGCACTGATTCATCTGCTTCTCAGATGACACATCTGCTGCTGGCGATCATGCTCATGGCTGATTCTTCCCCCATTTCAGAGCTTCCGGACCGGGACCGGGACGTGACCCACTTGTTCGAACCCATAAGGCTGAAGGAGTTGCCCCACCTCACCCACCACGTCCCAAACCTCCAAGCACGACCCAACCCATTGGATGACAACCCTTACTTTCACACGCCCCAAGTCGAGGGCTTCTACATGACACCAGACGACGTCGTGCTCTTCCCCTCCCCGCGCCTGGCCTACCACCGCGCCGGTCCACGTAAGCAGATCTACGTGGACCCCAGCGATTCCCGAGTGGCGATTGTCACGTGCGGGGGTCTGTGCCCTGGCCTCAACACCGTCATCAGGGAGCTCGTGGTGGGCTTGTGGGACCTCTATGGTGTGCGTCACATCTTCGGCATCACCGCCGGTTACAGAGGCTTTTACTCCGACGAGGAGCCCCTCTCCCTCAACCCTAACACTGTTCGCGANTGGCACAACAAGGGCGGTACCACCCTTCAGACTTCCCGTGGNGGTTTTGATCTCCGCAAGATCGTCGATGCTATCCAAAATCGATCCTTCAATCAGGTGTACATTATAGGTGGAGATGGGACTCTGCGGGGTGCTGTGAAGATATTTAATGAAATACGACAACGCAAGCTGAATGTCGCAGTTGTTGGGATTCCTAAAACTGTGGACAATGATGTGGGAATAATTGACAGATCTTTCGGATTTCAAACAGCAGTTGAAATGGCTCAGCAAGCAATCAGTGCTGCTCATGTGGAGGCGGAGAGNGCAGTTAACGGTATAGGCCTGGTGAAGCTGATGGGTCGAAGCACGGGTCACATTGCTCTACACGCGACACTTAGTAGCCGCGATGTTGACTGCTGCCTAATTCCCGAAATAGATTTTTACTTGGAAGGAAAGGGAGGGCTCCTTGAGTTTCTTGACCAACGACTGAAGGAAAATGGGCATGCAGTGGTTGTAGTTGCAGAGGGTGCTGGCCAGGATATTATACCCAGAACTGAATCACAGAAGCAAGAACGAGATGAATCTGGTAACCCAGTGTTCCTGGATGTTGGTGTGTGGCTGAAGTCAGAGCTAAAGAAGTGGTGGGACAGGGACCACCCTGGTGAGTTATTTACGGTCAAGTACATTGATCCCACATACATGATTCGTGCAGTCCAGGCAAATGCCACGGATAACCTGTATTGTACACTCCTAGCGCACTCTGCAATTCATGGTATTATGGCAGGGTATACTGGATTTGTTGCCGGTCCTGTTAATGGCAATTATGCATACATTCCATTGGAAGATGTAGCACGTGCAGCTAACCCAGTTAATATAAATGATCATAAATGGTCATGGGTGAGATCTGTCACCACTCAGCCTGATTTTGTAAGGAGCTAGATATTCAGCCATCGAATCCAAGTTCTCAAAGAGCTTTCTTGGAACNCATACTTTGTATTCATCGGTGATTCTCATGTTCTGATGTAATATGTTGTTCCTAGTGGTGGCTGAAGAGTCTTGGTAAAAGATGGATGTGATGTGCAGAACTACAGATGATGTACGAATTTGTATCGCCTATACGTATTTTGTATCACAAGTACTTTTATGACTATCAATAAATCAGCTNACTAAAGTTTCAAATTGAATTTCCTTGGCATTTTTATTTGAGGTGGGTGGAGCAGCGTACCCGTATGACGTAACGCAGAAGACATGGTCAAAATATTAGAAGGGTTGGAATCCTTAATTATAACTAGTGCCTCTTTTGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	471397	478627	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006002 fructose 6-phosphate metabolic process

GO:0006096 glycolytic process

molecular_function

GO:0003872 6-phosphofructokinase activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002356.1	PF00332.13	Glyco_hydro_17	33	351	4.60E-72
Glyur000030s00002356.1	PF07983.8	X8	372	439	1.30E-14
Glyur000030s00002356.1	PF00365.15	PFK	572	806	2.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.903
SRR1783600	control	22.576
SRR1783602	moderate drought stress	21.984
SRR1811619	moderate drought stress	20.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.538
DRR006520	Root Summer glycyrrhizin high producing strain	39.043
DRR006521	Root Winter glycyrrhizin high producing strain	60.304
DRR006522	Root Winter glycyrrhizin high producing strain	57.988
DRR006523	Root Summer glycyrrhizin low producing strain	45.396
DRR006524	Root Summer glycyrrhizin low producing strain	45.963
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.661

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.238
SRR2868004	Drought Stress (root)	17.918
SRR2967015	Control (root)	20.458

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.729
SRR9715740	Leaf	8.449
SRR9715741	Leaf	13.191
SRR9715739	Root	36.142
SRR9715742	Root	41.077
SRR9715743	Root	40.552

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.375
SRR8749028	MeJA induced 9h	22.859
SRR8749029	MeJA induced 9h	20.651
SRR8749030	Uninduced	7.485
SRR8749031	Uninduced	4.760
SRR8749032	Uninduced	5.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.044
SRR8400027	Control - Root	23.462