Gene detail

Gene detail information of Glyur000030s00002346

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79610.1	3.00E-107	Na+/H+ antiporter 6
NR	KHN40748.1	0	Sodium/hydrogen exchanger 6 [Glycine soja]
COG	YP_007172905.1	1.00E-12	NhaP-type Na+(K+)/H+ antiporter [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q8RWU6\|NHX6_ARATH	2.00E-179	Sodium/hydrogen exchanger 6
trEMBL	tr\|G7ISS2\|G7ISS2_MEDTR	0	Sodium/hydrogen exchanger {ECO:0000256\|RuleBase:RU003722}

Sequence

Transcript Sequence

>Glyur000030s00002346.1
ATGAGGATGGAGGGTAATGATATTGAAGATCAAAATTCTCCAGTTGGAGAGAAAGAGCAGCAGGCAGCGGGACTGGGCATTCTAGTTCAGATTATGATGTTGGTTCTCTCATTCGTTTTGGGTCACATTCTCCGTCGCAAGAAGATTTACGCTCTTCCTGAAGCCAGTGCTTCCCTTCTCATCGGCTTACTCGTTGGTGCACTTGCCTACATTTCCAACGCTCAAACCAATATAAGTTATCTCGGTGGATTGATCTACCTCATATACAAACTACCTTTTGTTGAGTGTCTAATGTTTGGTGCTCTTATATCTGCAACCGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTTGGCACAGATGTTAATCTATATGCCTTAGTATTTGGAGAATCTGTTTTGAATGANGCAAACCTATTTAAGTATGCAGGGTTGAATATTGACACGTACATGCTTGCAGAAGGTCTTGGCCTGTCTGGTATTGTATCAATATTATTCACGGGAGTGGTCATGAAGCGTTACACATATTCAAATTTGTCACAAAATTCTCAAAGATTTGTGTCTGCTTTTTTTAAGTTGATATCATCGTTAGCAGAGACCTTTGTATTCATCTACGTGGGCATTGATATTGCAATGGAGCAACATAGCTGGTCACACGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGTTGTAAACAACATTGTTTGGTCACTTCATGCAGGGCAGCCAATGTATTCTCTTGTGCTTATCTGGTCAACTTGGTCAGACCTGCACATCACCAGATACCTCTAACACACCAGAAAGCACTTTGGTACAGTGGACTTCGAGGGGCAATGGCATTTGCCCTTGCTCTACAATCAGTTCATGATCTTCCAGAAGGACATGGAAAGACCATCTTTACTGCAACTACAGCAATAGTTGTTTTAACGGTATTGCTGATTGGTGGTTCAACATGCACCATGCTGGAAGCTTTAGAAGTTATAGGTGGGGACAGTCATATTAATGATAGCCCTTTGGCTTCAGTTAGTGTCATAACGAATATTGAGGGAAATAATGTCAATGGTTATATTTCTCCTTCGTATGATGAAGAATCGACACCAGGGAACAAAATCAAGATGAAGCTACAAGAAATCCACAAGAGTGCTGCATCTTTTACAACATTAGATAAAAACTACCTCACCCCATTCTTTACTAGTCAAAATGGAGATGAAGAAGTTGAACTTCTAACTTCTCGAAGAGCGGGATTCCACGACCACGGCGACCATTATTCACCATGATATTTTCCAAACAGCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	367422	372706	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002346.1	PF00999.16	Na_H_Exchanger	81	135	2.10E-11
Glyur000030s00002346.1	PF00999.16	Na_H_Exchanger	149	327	4.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.687
SRR1783600	control	1.804
SRR1783602	moderate drought stress	2.153
SRR1811619	moderate drought stress	2.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.081
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.639
DRR006524	Root Summer glycyrrhizin low producing strain	4.427
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.079
SRR2868004	Drought Stress (root)	5.587
SRR2967015	Control (root)	6.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.060
SRR9715740	Leaf	0.037
SRR9715741	Leaf	0.000
SRR9715739	Root	0.069
SRR9715742	Root	0.374
SRR9715743	Root	0.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.867
SRR8749028	MeJA induced 9h	3.621
SRR8749029	MeJA induced 9h	4.372
SRR8749030	Uninduced	1.576
SRR8749031	Uninduced	0.748
SRR8749032	Uninduced	1.566

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.948
SRR8400027	Control - Root	9.151