Gene detail information of Glyur000030s00002342 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02410.1 | 8.00E-102 | |
| NR | XP_007154099.1 | 2.91E-175 | hypothetical protein PHAVU_003G090400g [Phaseolus vulgaris] |
| COG | YP_007166751.1 | 2.00E-19 | hypothetical protein PCC7418_0301 [Halothece sp. PCC 7418] |
| trEMBL | tr|V7C9R4|V7C9R4_PHAVU | 1.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:ESW26093.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 323214 | 328959 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002342.1 | PF05991.6 | NYN_YacP | 128 | 293 | 4.60E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.008 |
| SRR1783600 | control | 16.247 |
| SRR1783602 | moderate drought stress | 24.692 |
| SRR1811619 | moderate drought stress | 24.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.675 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.698 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.413 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.590 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.836 |
| SRR2868004 | Drought Stress (root) | 20.629 |
| SRR2967015 | Control (root) | 24.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.474 |
| SRR9715740 | Leaf | 59.369 |
| SRR9715741 | Leaf | 37.575 |
| SRR9715739 | Root | 6.926 |
| SRR9715742 | Root | 8.097 |
| SRR9715743 | Root | 7.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.975 |
| SRR8749028 | MeJA induced 9h | 10.813 |
| SRR8749029 | MeJA induced 9h | 10.275 |
| SRR8749030 | Uninduced | 13.668 |
| SRR8749031 | Uninduced | 9.704 |
| SRR8749032 | Uninduced | 13.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.445 |
| SRR8400027 | Control - Root | 17.917 |