Gene detail information of Glyur000030s00002339 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48410.1 | 2.00E-06 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
| NR | AIN75619.1 | 1.58E-09 | argonaute 5 [Dimocarpus longan] |
| Swissprot | tr|Q5Z5B2|AGO1D_ORYSJ | 6.00E-07 | Protein argonaute 1D |
| trEMBL | tr|A0A088Q0I2|A0A088Q0I2_9ROSI | 6.00E-10 | Argonaute 5 {ECO:0000313|EMBL:AIN75619.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 299747 | 311608 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.960 |
| SRR1783600 | control | 16.680 |
| SRR1783602 | moderate drought stress | 20.260 |
| SRR1811619 | moderate drought stress | 19.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.567 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.513 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.499 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.887 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.894 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.161 |
| SRR2868004 | Drought Stress (root) | 6.823 |
| SRR2967015 | Control (root) | 5.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.593 |
| SRR9715740 | Leaf | 3.275 |
| SRR9715741 | Leaf | 5.856 |
| SRR9715739 | Root | 1.108 |
| SRR9715742 | Root | 4.992 |
| SRR9715743 | Root | 2.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.918 |
| SRR8749028 | MeJA induced 9h | 9.457 |
| SRR8749029 | MeJA induced 9h | 4.602 |
| SRR8749030 | Uninduced | 6.924 |
| SRR8749031 | Uninduced | 5.277 |
| SRR8749032 | Uninduced | 2.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.079 |
| SRR8400027 | Control - Root | 10.825 |