Gene detail

Gene detail information of Glyur000030s00002332

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12780.1	5.00E-170	UDP-D-glucose/UDP-D-galactose 4-epimerase 1
NR	O65780.1	0	RecName: Full=UDP-glucose 4-epimerase GEPI42; AltName: Full=Galactowaldenase; AltName: Full=UDP-galactose 4-epimerase [Cyamopsis tetragonoloba]
COG	YP_007424767.1	7.00E-144	UDP-glucose 4-epimerase / UDP-N-acetylglucosamine 4-epimerase [Bacillus thuringiensis serovar kurstaki str. HD73]
Swissprot	tr\|O65780\|GALE1_CYATE	0	UDP-glucose 4-epimerase GEPI42
trEMBL	tr\|V7C9Y9\|V7C9Y9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26095.1}

Sequence

Transcript Sequence

>Glyur000030s00002332.1
GTCGGGGTGATGATGCTTATAAATTACTATTAGGTGCAGTGGGAGGGGGAAGAAGGGAAGAGGAAGCATAATAATAATAATAATAATCACAAAGAGTACGTAGTAGGAAGATGGTGTCAGAGCAGCAATCGCCGCAGCAAAGGAAGAAAACGATACTTGTGACGGGAGGGGCGGGGTTCATCGGGTCACACACGGTGGTTGAGCTTCTGAAACAGGGCTTCAGGGTGTNCATCGTGGACAACCTCCACAACTCGGTGATCGAAGCGGTCGAGAGGGTTCGCCATCTGGTGGGGCCACGTCTCTCCAGCAACCTCGAGTTCTACCACGCCGATCTCCGCAACAAGCACGAACTGGAGATGCTCTTCTCCAAGACGAGGTTCGATGCGGTGATCCACTTCGCGGGGCTGAAAGGCGTGGGAGAGAGTGTGGGAGAGCCACGCCGGTATTTCGACAACAACCTGGTGGGCAGCATCAACCTGTATCAGGTGATGGCGAAATTCAACTGTAAGAAGATGGTGTTCTCGTCGTCGGCGACCGTGTACGGACAACCCGATCGGGTTCCATGCGTTGAGGACTCCAAGTTGCACGCCATGAATCCTTATGGACGAACCAAGCTGATCCTGGAGGAAATAGGGAGGGACATTCAAAAGGCGGAGACGGAGTGGAGGATAGTGATGTTGAGGTATTTCAATCCGGTGGGGGCACACGAGAGTGGGGAGATAGGGGAAGATCCGCGGGGAATCCCCAACAACCTCATGCCTTACATCCACCAAGTGGCCGTTGGGAGACTTCCCGAGCTCAACGTCTATGGCAATGATTACCCCACCAAAGATGGCACCCCCATCCGGGATTTTATCCATGTAATGGACTTGGCGGATGGTCACATTGCAGCCCTGCGGAAGCTTTTTGCAGCAGACAACATCGGTGGTTGTACTGCCTACAACTTGGGGACTGGCCGCGGTACATCGGTGCTGGAAATGGTTGCCGCATTTGAAAAGGCTTCGGGCAAGAAAATCCCTATAAAAATGTGTCCCAGGAGGCCGGGAGATGCTACTGCTGTTTATGCATCCACCGAGAAGGCTGAAAATGAACTTGGTTGGAAGGCAAAATACGGAATAGAGGAGATGTGCAGGGACCAGTGGAATTGGGCCAGCAAGAATCCGTGGGGGTACCAGGGCAAGCATTGAAATTCCGTTTTCACTTACTCAGTTGCCAAGACTTCCTACCTACCTNTTATCTTCATTCATTTTTTGGGGCCTTCCACCATATCTTCTTAAGATATCAAATTTTGATGTTTCTTTTGTTGCTTCTATTGATGATTGATTCTTTTACACTTGTTATGTTATGTTCGCAGAACTAGTTGTCTGATTATGACCTCTTACCTGTACAAAGAGGCACTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	248168	250099	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01784	galE, GALE	EC:5.1.3.2	Galactose metabolism	map00052
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006012 galactose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0003978 UDP-glucose 4-epimerase activity

GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002332.1	PF01370.16	Epimerase	15	266	3.60E-50
Glyur000030s00002332.1	PF13950.1	Epimerase_Csub	293	354	1.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.828
SRR1783600	control	9.006
SRR1783602	moderate drought stress	8.077
SRR1811619	moderate drought stress	7.962

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.904
DRR006520	Root Summer glycyrrhizin high producing strain	20.386
DRR006521	Root Winter glycyrrhizin high producing strain	2.538
DRR006522	Root Winter glycyrrhizin high producing strain	2.480
DRR006523	Root Summer glycyrrhizin low producing strain	12.652
DRR006524	Root Summer glycyrrhizin low producing strain	12.668
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.996
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.010

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.313
SRR2868004	Drought Stress (root)	37.831
SRR2967015	Control (root)	26.884

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.127
SRR9715740	Leaf	5.378
SRR9715741	Leaf	3.545
SRR9715739	Root	15.328
SRR9715742	Root	21.622
SRR9715743	Root	19.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.557
SRR8749028	MeJA induced 9h	2.694
SRR8749029	MeJA induced 9h	2.984
SRR8749030	Uninduced	1.470
SRR8749031	Uninduced	0.156
SRR8749032	Uninduced	1.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.717
SRR8400027	Control - Root	97.751