Gene detail

Gene detail information of Glyur000030s00002330.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02470.1	3.00E-101	alfin-like 6
NR	XP_006600266.1	3.62E-156	PREDICTED: PHD finger protein Alfin1-like [Glycine max]
Swissprot	tr\|Q40359\|ALFIN_MEDSA	8.00E-145	PHD finger protein Alfin1
trEMBL	tr\|I1MQU2\|I1MQU2_SOYBN	1.00E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G00630.1}

Sequence

Transcript Sequence

>Glyur000030s00002330.1
ATCAACCCCATCGGTTGTAGTTATTAGTCCCTCCTATATGATATATATGTCTCTGCAATGCCAAATGCCAATGTTCGTTTCCTATTTCCACAATCACTACTCTTGTATGCCTCGCCTTAGATAAACACCAGCTCCTTTTTTCCCTAAATCTGTTCACTTCAGGATTGAATTGAAGATAGGGGAAGAGGGATAAAAGGAATTATAAAAAGAAAAACCCTAGCCATTAAGAAAGGAAGGAAGGAGCCGAAAATCAAGAGGGATTATACTCATATTTGGAATTGGAATTGGAATTGCTGAGGAGAGAGAGANAGAGAGAGAGGGGATGGAAGGAATACCGCACCCAATACCCAGGACAGTTGAGGAGGTTTTCAGCGACTACAAGGGCAGACGCACTGGATTGATCAAGGCCCTCACTATTGACGTTGAAAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGTATGCAAGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCGTGGCTCCTTGCTGTNGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAGATTGTGACAGGAAGTGCTAAGCCATCAAAGGACCAACTGACTGCTCACAACAATGGTAGCAAGTGCAAATCAAGTGGAAAGTCCCGCCAGTCTGAGTCTCAGGCAAAGGGAGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGATGACGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGCGGTGATAATTATGGCACTGACGAATTCTGGATCTGTTGTGATATTTGCGAGAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCCGCCAAAGCTGAGCACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGGCAAGAGTTTGAAAGCTCTGAACCTTTGGACCAATGACCGGTTAAACAGCAGACAAGATTTAGAATGTTTGATAGCATTTTTACAAGTGAAAACATTGTTGCCTGTTCTAATCAATGCACTTCAGTGACTATGCAGACGGAATTTCAAGTTTTGCTNCTGTTCATTCCTGCTGTCCAATCTTATTCGGAATTGTTTTTTTAAGTAGTCATTGGCAACAAATATATTATATAAATATATTCTGCAGTTTCTGGTTTTAATTTTAATATTTCTTTCATTTATTTATGCATCTTTTAATGTGGGAACCAGAATGATAAACCGGCCTCNTTGTGGTTCGACTCTAAGATGAGTCCTCCAATGGACTTGATGCTGCTCGAACCAAGGCTCTTGGGCAAGGTATACCTTTGCATGGGAACCGGGGTGCGCTCCATTTGAGTGTTAATTGAAGGATGTCNAGTTTAAAAAGATACAAAAAGCCGGCTACTGACATTTGTTTTAAGTGAGGGTTCTTTTTAGCAGGTTCTTGAAGAAATCTTTGAGGGAACTGAAGCGTGATGGTTCCAACTGTTGGAATGTTTAGGTTTTGATATATCGAATTCAAGGATGCAGGACCCGTCTAAGGCGTANTTTGTCAACAGTAACCAGCATTATGGGATCTGACAATGGCAACTCATGCATATTACTGATCAGTGCGAAAATTAAGCCCACCAACCATCCTCATTATGGGTAATCAATATTATTGTTTTTTATTGCTAAATCATAACATTCAGATTTGATTAGAAAGTTACGTGAATAACATGACTGGCTAGAAGGGAGAATATTCAACCCACTTTGATTGGAAGTATATATCCAAATAGAATATTAGTATATCAAGAATAAGAGAGTAACTATAATGAGAGAGACTTGAGTCAAAGAGGTGCCTAATTTTCAGTTCTTACAAACAGACAGAGACATANAGACTATATTACTCATTCTAAATAGCACGAGACTCTGCTGTCAACTTGTCATTGTCACTAATATTATGCCTAATTATAATTTTGAGGCTAAGTAACTAGCGGTGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	234999	242124	-

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002330.1	PF12165.3	DUF3594	10	142	7.00E-82
Glyur000030s00002330.1	PF00628.24	PHD	199	248	5.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.529
SRR1783600	control	22.655
SRR1783602	moderate drought stress	22.693
SRR1811619	moderate drought stress	22.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.967
DRR006520	Root Summer glycyrrhizin high producing strain	31.542
DRR006521	Root Winter glycyrrhizin high producing strain	28.623
DRR006522	Root Winter glycyrrhizin high producing strain	27.870
DRR006523	Root Summer glycyrrhizin low producing strain	25.127
DRR006524	Root Summer glycyrrhizin low producing strain	25.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.790
SRR2868004	Drought Stress (root)	48.908
SRR2967015	Control (root)	47.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.900
SRR9715740	Leaf	42.892
SRR9715741	Leaf	43.914
SRR9715739	Root	7.831
SRR9715742	Root	19.964
SRR9715743	Root	17.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.626
SRR8749028	MeJA induced 9h	21.388
SRR8749029	MeJA induced 9h	21.810
SRR8749030	Uninduced	22.505
SRR8749031	Uninduced	21.101
SRR8749032	Uninduced	15.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.460
SRR8400027	Control - Root	41.821