Gene detail

Gene detail information of Glyur000030s00002329

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02480.1	0	AAA-type ATPase family protein
NR	XP_003528725.2	0	PREDICTED: protein STICHEL-like [Glycine max]
COG	YP_007124443.1	8.00E-75	DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC 7113]
Swissprot	tr\|O64728\|STI_ARATH	0	Protein STICHEL
trEMBL	tr\|I1KNQ8\|I1KNQ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G40180.1}

Sequence

Transcript Sequence

>Glyur000030s00002329.1
GGGGCAGTCAACTAAAAAAGACGCCCATTTCATTTTCACAATCACACAGGAAATAGAAAACTAATAGTGTTTGTCTGCCAGATCTGCTGCTGCCGCTAAAATCCAGTGCACTCAAAGTTATGGTTTTTACAAGATACATAGAAATTTGGTAGACAGTGATGAAGTGGGTATGTGAATGTGAGTGAGTAAGAGTAGAAGAGTAAATGTAAATGAGGGGCGTGTTGTTGACTGGGGGTTGAACATTGAACAAGGAAGAGGAAGAAGCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAAGGATGTCGGAAATGCATCAAAGTCCAACACCAAGCAGGCTCCACCTCAAGAAGGAGCTCACCCAAATTCGCAAGGCTGCTCGTGTGCTCAGGGATCCCGGCACCACATCTTCCTGGAAGTCCACGAGATCTGTGGCTGCTGCACCTGCACCTGCACCTGCATGGAAGGAGAAGGACAATGAGAAAGAGAAGGAGAAGAGGGTGTTCCTCTACAACTGGAAGAACTACAAATCGTGGAACGAGGAAGAAGAAGAAGAAGAAGAGGGTGCAGGTGGATCTTCCTCGCTCCTCGAAGACAGCTTGAGTGATGCCCTCAACGGTTGCGATTCCAAGAGCGATGCTGGGACTCGCCCTTCCATATTCCCCAGGAGAACACTCCCCATCAAGAAGAAGTGTAAGAAAACCAACAACAACCCCCGTTTCGATTTCTTATCGCACAGACAAACCAATCTAGGCACTGCTAGTAGTAGAAAACTCGCACCCTCCAACTCCAAGGCATTGCTGCTAGAGCGGCGGCATCATTCTTTGGCGAGGGATGACTCTGATGATACCGAAGGTTACTGTAACTCTGTTTCGGGGGCTTCTCCTCTGCTCCTCAGACTCAGGCACAAGTTGCCGCCGAGGAGAAAGACAAGCCGAAGAGATGACTCTTCTTACTCCTACAGCACCCCTGCATTGTCCACCAGTTCTTACAATAGGTACGGTGGTGGTCGACATTATCCCAGCACTGTTGGATCCTGGGATGGCACCACCACCTCCATCAATGACATTGATGACATTGATGATGATGATGATCACTTGGATTTGCCCGGTCGCCAGGGATGTGGAATCCCTTGCTATTGGTCTAAGAGGAAAGGAAGTTGTTGTTCCCCTTCACTGTCTGACACTCTGAGGAGGAAAGGGAGCAGCATGTTTTGTGGAAGCCAATCCATTTATCCGAGACACCGGAGATCCTCTTCCGCCTCCCACAAGCGGAGGATCTCCCTGAGGAGTGCNCAGGGTGTTCTCCCGTTGCTCACCAACAGTGGTGATGTTAGAGAGGGGTCCTCCATGGGAACTGGNAGGAGTTATGATGATGATGAACTCTCTACAAACTTTGGGGAGCTTGATCTCGAGGGCTTGAGCAGATTGGATGGGAGGAGGTGGTCATCAAGTTGCAGGAGCAGGAGTCAAGAGGGATTGGAGATTGTGGCTCTCAATGGGGAAGGGGAGGATGACGGCACGCCGGAAAACAGTAGGAGTTTCAGCCACAAGTACAAGCCTCTCTTCTTTGGTGAACTGATTGGGCAGAACATTGTGGTCCAGTCACTTATCAATGCCGTTTCCAGGGGCCGGATTGCTCCTGTCTATCTTTTCCAGGGTCCCCGGGGAACTGGTAAAACATCAACGGCTAGGATATTCGCGGCTGCCTTGAATTGTGTGGCTGCTTCTGATGAGAGCAAGCCTTGTGGCTACTGCGGGGAATGTGCTGATTTCATTTCTGGCAAGAGCAGTGATCTGGTGGAAGTCGATGGAACTAATAAGAATGGAATTGATAAGGCTAGATATCTGCTGAAAAGACTGTCAGTTCGATCTTCATCAGCCTACTCGCGGTATACAGTTTTTGTTATTGATGAGTGTCACCTGTTACCCTCCAAGACATGGCTGGGGTTTCTCAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTGTTCATATTCATAACATCCGATCTTGACAATGTGCCGCGAACAATTCAGTCTCGATGTCAGAAGTACCTCTTTAATAAAATCAAAGACGGGGATATTGTGACCAGATTAAGGAAAATATCTACTGAGGAGAACCTNGATGTGGAAACAGATGCACTGGACCTCATTGCTGTGAATGCAGATGGTTCACTCCGAGACGCGGAAACAATGTTAGAACAGCTTAGCTTGCTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAGCTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTAATGTCCCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATACAGTCGTTGATGCCAAACCTGATGGTTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGATTAAAGAATGCTTTGAAGCTTCTCTCTGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTCGGTTCTGTAACTTCTCCAGATCTTACTCAGTCAGGAAGCAGCAGGAGGCAGAGCTGTAAGACAACAACTGAAGATGACCCATCAAGTGCCTCAAGAGAGATTACTTCTTTCAAGCACATGTCAGACCTCCAATATATGCCTCAAAGGTCAACATCCCCAGCTTCTCAGCAAAAGGCAGTAAATGGAAGTTCCAGCCATCNAAAGGGTATGTCCTCAAAGATGGATGGTTTCAGCTTGAAATCAAAGCCATCAAATAGCCCAATCATAGATGANGGCTCCACAGTGGTCTCATCTGATGGTCTTGTGGTTGGGAATACAATGTTTAGATGCATTGATTCAGGGAAGTTATCTGACATCTGGNCATGTTGTATCGAGAGGTGTCACTCTAAGACATTAAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCATATGTGAAGTTGAAGGTGTTCTGGTAGCATATGTTGCATTTGGTGATGGAGATATTAAACTTAGGGCNGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCAGAATTATCCACCTGCCAGATGGNNAAGGTGAAAATCGGGCTAATCTACNGGGTCTAAAGNAAGCAGAGTCAACAGGGGCAATTGAGAAGGAACAAAGACGGGGTCATATGAATGGAACTGGGTCTTATTCAAGTTTGCCTCCTTTACCGGATGCAAACCTTCAATCCGCCACGGCTTCATCAGATATTCTGGGTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTNCAGGCTGTAGAGAAAGGTTCCCCGGGATCGTTGAGTCGTTTGAGACCGGAAAAGAATCAAGTCCTGCCACAGGATGGTATAGTGGAGTCCCTGGATTCAACAAGATTTTCCTCCCATCAGCATTGGGAAGATGANCCAAAGAGTGATCTCAAAGTTTTGAGTGTTAAAAATGGAAGGGTCCTACAGAAGGATCAGATTGGTAAAAGGGCAGATCGGTATCCCATGTCCCCAAGTTTATTGCATGACACCAGTTTAGCAACAATGTCCGGAAAAGATAATCTGGGATATGAGTCGAGCTCGGGGCCTGGAGGCTGTGGATTTTTATGTTGGAATAACAACTCCAAGACGAGAAGGGTAATCAAGGTAAAAGGCACCCCAGTTGGAGCGCGTAAACCTGGTCGTCTTACATTGTTTGGTGAGTGTGGTAAGCCCAAGAAAAGGGATTCTAAAAGATAGGGAGGGAGGTTTATCCATCTGGCATTGGATATTAATATTGTTCTATTTCTTTTTTTTTTCTTTACTCAAAATTTTCCCCAACTTTTTTCTCTTCTTTATTCGATTGGGGCGATTCTTCAAGGATGGG

Protein Sequence

>Glyur000030s00002329.1
MSEMHQSPTPSRLHLKKELTQIRKAARVLRDPGTTSSWKSTRSVAAAPAPAPAWKEKDNEKEKEKRVFLYNWKNYKSWNEEEEEEEEGAGGSSSLLEDSLSDALNGCDSKSDAGTRPSIFPRRTLPIKKKCKKTNNNPRFDFLSHRQTNLGTASSRKLAPSNSKALLLERRHHSLARDDSDDTEGYCNSVSGASPLLLRLRHKLPPRRKTSRRDDSSYSYSTPALSTSSYNRYGGGRHYPSTVGSWDGTTTSINDIDDIDDDDDHLDLPGRQGCGIPCYWSKRKGSCCSPSLSDTLRRKGSSMFCGSQSIYPRHRRSSSASHKRRISLRSAQGVLPLLTNSGDVREGSSMGTGRSYDDDELSTNFGELDLEGLSRLDGRRWSSSCRSRSQEGLEIVALNGEGEDDGTPENSRSFSHKYKPLFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAASDESKPCGYCGECADFISGKSSDLVEVDGTNKNGIDKARYLLKRLSVRSSSAYSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTEENLDVETDALDLIAVNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDAKPDGSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVTSPDLTQSGSSRRQSCKTTTEDDPSSASREITSFKHMSDLQYMPQRSTSPASQQKAVNGSSSHXKGMSSKMDGFSLKSKPSNSPIIDXGSTVVSSDGLVVGNTMFRCIDSGKLSDIWXCCIERCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLPDGXGENRANLXGLKXAESTGAIEKEQRRGHMNGTGSYSSLPPLPDANLQSATASSDILGEGNGVRERRQDNPMQRIESIIREQRLETAWXQAVEKGSPGSLSRLRPEKNQVLPQDGIVESLDSTRFSSHQHWEDXPKSDLKVLSVKNGRVLQKDQIGKRADRYPMSPSLLHDTSLATMSGKDNLGYESSSGPGGCGFLCWNNNSKTRRVIKVKGTPVGARKPGRLTLFGECGKPKKRDSKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	226121	232893	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

cellular_component
GO:0009360 DNA polymerase III complex

molecular_function

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002329.1	PF13177.1	DNA_pol3_delta2	428	589	7.10E-31
Glyur000030s00002329.1	PF12169.3	DNA_pol3_gamma3	642	753	1.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.586
SRR1783600	control	4.543
SRR1783602	moderate drought stress	3.197
SRR1811619	moderate drought stress	3.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.104
DRR006520	Root Summer glycyrrhizin high producing strain	5.059
DRR006521	Root Winter glycyrrhizin high producing strain	10.641
DRR006522	Root Winter glycyrrhizin high producing strain	9.775
DRR006523	Root Summer glycyrrhizin low producing strain	2.603
DRR006524	Root Summer glycyrrhizin low producing strain	2.639
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.570

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.710
SRR2868004	Drought Stress (root)	12.044
SRR2967015	Control (root)	15.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.455
SRR9715740	Leaf	1.968
SRR9715741	Leaf	3.015
SRR9715739	Root	2.203
SRR9715742	Root	7.157
SRR9715743	Root	6.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.168
SRR8749028	MeJA induced 9h	11.171
SRR8749029	MeJA induced 9h	7.790
SRR8749030	Uninduced	2.324
SRR8749031	Uninduced	0.953
SRR8749032	Uninduced	2.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.031
SRR8400027	Control - Root	14.130