Gene detail

Gene detail information of Glyur000030s00002313

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59740.1	2.00E-176	Major facilitator superfamily protein
NR	XP_007153917.1	0	hypothetical protein PHAVU_003G076000g [Phaseolus vulgaris]
COG	YP_004267971.1	4.00E-20	TGF-beta receptor type I/II extracellular region [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q93VV5\|PTR16_ARATH	0	Protein NRT1/ PTR FAMILY 4.3
trEMBL	tr\|V7CAG3\|V7CAG3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25911.1}

Sequence

Transcript Sequence

>Glyur000030s00002313.1
ATGAGATCTGCTGCCTTCCTTCTTGGGCTTCAGGCATTTGAGATAATGGCAATAGGTGCAGTGGGGAACAACCTCATAACGTACGTGTTCAACGAGATGCACTTCTCCTTGTCCAACTCTGCCAACGTTGTCACCAACTTCGTCGCCACCATATTTCTTCTCTCCCTCCTCGGTGGCTATCTCTCCGACTCCTTCCTCGGCTGCTTCTCCACCACTCTCATCTTCGCTTTCCTTAAACTCTCTGGTTTCATATTACTGTCGGTGCAAGCCCATTTTCCTGAGTTGAAGCCACCGCCGTGCAACATGTTAACGGATGGAGAACACTGCACAGAAGCGAAGGGGTTGAAGGCGATGGTGTTCTTTGTGGCAATATACATGGTGGCATTGGGGAGCGGGTGTGTGAAGCCCAACATGGTTGCCCATGGAGGAGACCAATTCAGGCAGGACAACCCCAAGCAGTTGAAGAAGCTCTCTACCTATTTCAATGTCGCATACTTTGCATTCTCTTTGGGAGAACTCGTCGCCCTCACAGTTCTTGTTTGGGTTCAGACCCATTCCGGAATGGACGTGGGATTCGGGGTATCCGCTGCTGCAATGGCCATGGGACTGATCAGCCTCCTATGTGGGACTCTGTATTACAGGAACAAGCCCCCACACGGCAGCATCTTAACGCCTATTGCTCAAGCTTGTATCAGAGTCCAATTAGAGGGGAGTAATTACAGAAAGGAAAGCGCATGGAGATTGTGCAGTGTTGCCCAAGTTGAGCTAGTGAAGATATTGCTGTCGGTTCTTCCCATATTTTCTTGCACCATTGTTTTCAACACAATCTTAGCACAACTCCAAACATTCTCAGTCCAACAAGGGAGTGCCATGGACACCCGTCTCACCAAATCCTTTCACATCCCTCCAGCCTCACTTCAATCCATCCCTTACATCTTGCTCATCTTTGTGGTCCCTCTCTATGACGCCTTCTTTGTCCCATTTGCCAGAAGAATCACCGGCCACGAGTCTGGAATCTCCCCTCTGCGCCGAATAGGTGTTGGCCTCTTTCTGGTTACCTTCTCTATGGTTTCGGCTGCGCTATTGGAGAAAAAGAGAAGGGATGCGGCTATGTTTACAGCCGTTGGGCTTCTTGAGTTCTTTTACAAGCAGTCCTTGAAAGGGATGCAATCATTCCTCACCGCCATCACATATTGCTCCTACTCCTTTGGGTTTTATTTGAGCTCACTGTTGGTTTCTTTGGTGAACAAGATCACTTCAAGGTCTTCAACTGGTGGTTGGCTCCACCACAACAATCTCTACCAAGACAGGCTTGATCTTTTCTATTGGTTAATGGCTGCACTAAGCTTCCTCAACTATCTCTTTTGGTCCAGATGGTATTCTCATGCTCCTAATTCCACCACCATAACCCAACAAGGCGATGATATTCCTAATAATGCCAAGGATAATGTACAATCCATGCGGCCTGCAGGGCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	145483	148304	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002313.1	PF00854.16	PTR2	69	229	1.20E-32
Glyur000030s00002313.1	PF00854.16	PTR2	245	368	1.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.485
SRR1783600	control	0.445
SRR1783602	moderate drought stress	0.189
SRR1811619	moderate drought stress	0.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.697
DRR006520	Root Summer glycyrrhizin high producing strain	0.683
DRR006521	Root Winter glycyrrhizin high producing strain	0.302
DRR006522	Root Winter glycyrrhizin high producing strain	0.106
DRR006523	Root Summer glycyrrhizin low producing strain	0.725
DRR006524	Root Summer glycyrrhizin low producing strain	0.715
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.628
SRR2868004	Drought Stress (root)	7.929
SRR2967015	Control (root)	7.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.732
SRR9715740	Leaf	0.774
SRR9715741	Leaf	0.347
SRR9715739	Root	0.524
SRR9715742	Root	0.961
SRR9715743	Root	0.407

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.981
SRR8749028	MeJA induced 9h	0.554
SRR8749029	MeJA induced 9h	0.323
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.161
SRR8749032	Uninduced	0.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.516
SRR8400027	Control - Root	5.188