Gene detail

Gene detail information of Glyur000030s00002306

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10310.1	1.00E-89	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004499366.1	2.85E-132	PREDICTED: uncharacterized oxidoreductase YoxD-like [Cicer arietinum]
COG	YP_007092397.1	6.00E-75	short-chain dehydrogenase/reductase SDR [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9SY73\|PTALR_ARATH	2.00E-121	NADPH-dependent pterin aldehyde reductase {ECO:0000303\|PubMed:17550420}
trEMBL	tr\|A0A072V3L6\|A0A072V3L6_MEDTR	5.00E-131	Enoyl-(Acyl carrier) reductase {ECO:0000313\|EMBL:KEH32750.1}

Sequence

Transcript Sequence

>Glyur000030s00002306.1
CAGGAGAGGAGAGATAATTTGAAAGAGGTCCAGAGAGACGAACAAAATATCTTTTGATCCAAATCTAAAAATTAAAGGAGAGGAAGGGGGTGGATACGAAGAAGAAGAAGAGGAGGAGGAGGATGGGAGGGAGTGGGAGTGGGAGAATCGGAAAAGGAGTGGTAATGGGAAGTGGAACGATTCCAAGTGGGAGCCGCACGGTGTTGGTAACCGGAGTGAGCAGAGGCATAGGGAGGGCTCTGGCAATTGAATTGGCGAATCGAGGTCACACCATAATCGGGTGTTCCCGCACCCAGGATAGCCTCAACTCCCTCCAATCCCAACTCTCCTCAACTTCTTCTTCCAACCACCACCACCACCTCTTCCTCAACGCCGACGTGAAGTCGAACAACAGCGTCGAGGAGATGGCACGAATTGTGATGGAGAAGAAGTGCGTTCCGGATGTGATAGTGAACAGTGCGGGAAGCATAAACAAGAACAACAAGATGTGGGAGGTTCCGGTGGAAGAGTTCGATGGGGTGATTGATACCAACCTGAAAGGGACCGCCAATGTGCTGCGCCACTTCATCCCTCTCATGAAGGAAGGCATCATCGTCAACATGTCNTCCGGGTGGGGCCGATCCGGTGCTGCGCTCGTCGCCCCTTACTGTGCATCCAAGTGGGCCATCGAGGGCCTCACCAGGTCCCTCGCCAAGGAGTTGCCGCCCGGGATGGCCGTCGTCGCCCTCAACCCCGGTGTCATCAACACCGACATGCTCGCCTCTTGCTTCGGCGCCTCCGCCGCTCTCTACCAATCCCCTGAATCCTGGGCTCTCAAGGCAGCAACCATGATCCTCAATCTCACCCCAGCAGACAATGGTGCATCTCTCACCGTTTGACTTCACTTCACTTCACCCATGGCCATCAGCAGTGTGCTTCCTCAAACCCCTATTTTCATGATTGTTGTAGCATCATAAACAGAACAGATGTAGTTTCAATAGGTCCCATTTGTTTAAATCATAATGGAATGAAATAGAGAGTCTGATGGAGTGTGTTTCATTTCATCCCATGTTTTGCCTTTCCTTCCTTCTCCAATCTGGAGATATAGGANGATAAAACAGACAGGCCTACAAATATATATACAACGGAATGGACACCTTCCTTGAAAGGACCAGAATCACTCAAGAGTTTCATAACATGCTTCACCTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	118737	120235	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002306.1	PF00106.20	adh_short	26	193	5.20E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.407
SRR1783600	control	35.899
SRR1783602	moderate drought stress	38.694
SRR1811619	moderate drought stress	36.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.745
DRR006520	Root Summer glycyrrhizin high producing strain	34.607
DRR006521	Root Winter glycyrrhizin high producing strain	91.831
DRR006522	Root Winter glycyrrhizin high producing strain	85.334
DRR006523	Root Summer glycyrrhizin low producing strain	64.780
DRR006524	Root Summer glycyrrhizin low producing strain	66.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.023

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.079
SRR2868004	Drought Stress (root)	17.997
SRR2967015	Control (root)	24.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.796
SRR9715740	Leaf	31.867
SRR9715741	Leaf	16.301
SRR9715739	Root	20.617
SRR9715742	Root	11.881
SRR9715743	Root	14.389

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.877
SRR8749028	MeJA induced 9h	9.135
SRR8749029	MeJA induced 9h	12.218
SRR8749030	Uninduced	8.001
SRR8749031	Uninduced	2.737
SRR8749032	Uninduced	20.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.297
SRR8400027	Control - Root	24.318