Gene detail

Gene detail information of Glyur000030s00002301

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49890.1	0	chloride channel C
NR	XP_004499372.1	0	PREDICTED: chloride channel protein CLC-c-like [Cicer arietinum]
COG	NP_927128.1	1.00E-29	chloride channel protein [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q96282\|CLCC_ARATH	0	Chloride channel protein CLC-c
trEMBL	tr\|A0A072UTT7\|A0A072UTT7_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000030s00002301.1
ATGGATGATCATGAGAGGGACGTGGAGCAAATGGGAAACAATGGGAAAGTGGATNGGGTCATGTCGGGTTTGGGATCAAGATCAGGATCAGAATTAGAATCGGGGAGGCTCAAAGAGCCTCTGCTTGTGAAGAATAACAGGATGAACAATACTTCCCAACTTGCCATCGTGGGAGCCAAAGTTTGTCCAATTGAAAGTCTTGACTACGAGATCATTGAGAATGATATTTTTAAGCATGACTGGAGGTCTAAAGGAAAGGCTGAGATAGGGCAGTATGTTATCCTGAAATGGACCCTTGCACTTCTTATTGGTTTAGGCACAGGGCTTGTTGCCTTCTTCAATAACATTGGAGTGGAGAATATCGCTGGTTTCAAGCTTCTCTTCACCAACGATCTCATGCTCGAGCAACAGTACCATCAGGCTTTTGTAGTGTATGTTGGTTGTAACATGGTTTTAGCCATTGCTGCTGCAGCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGGTCCGGCATACCTGAGGTGAAGGCATATCTCAATGGCGTAGATGCTCCTTCTATATTGGCTCCAAGTACCCTATTTGTAAAGATTTTTGGTTCAATTTTCGGGGTTACAGCCGGTTTTGTTGTGGGTAAGGAAGGTCCTATGGTCCACACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTCGAAAATATGGGCTGACCTGGAAATGGCTTAGACATTTTAAAAATGACAGAGATCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCGGTTGGAGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTGTGGAGGACTTTTTTTACCACAGCTGTAGTGGCTGTGGTGCTAAGAGGNTTCACAGAATATTGTCGAGGTGGACAATGTGGTCTTTTTGGAGAAGGAGGATTGATAATGTTTGAAGTCAATTCGGCNAAGCCGGCATACAGCATACCTGACCTCCTCGTAGTTATATTTCTTGGAGTCATTGGAGGTCTTTTGGGAGGCCTTTACAATTATCTTGTGGATAAGGTCCTTCGCACTTACACCGTCATAAATGAGAAAGGCCCTATATTCAAAGTTCTACTTGTCATCATNATCTCCTTTTTGACCTCTTGCTGTTCATTTGGCCTTCCATATTTATCAAAGTGCATCCCTTGTCCTCCTCAATTGGGGGATGAGTGCCCAACTGTAGGGCGCTCTGGACACTACAAGAATTTTCAGTGTCCACCTAACCACTACAATGACCTTGCCTCTCTCTTTTTCACTACCAATGATGATTCTATTCGCAACTTGTTTGTTGCTGGGTCTGACAAGAGATTTATGCTCTCTAGTCTTGTAATTTTCTTTGTGGCCGTATANTTTCTTGGAATTGTCACTTATGGCATTGCCATTCCNTCTGGACTTTTTATTCCTGTCATCCTTGCTGGAGCTTCTTATGGGCGTGTTGTAGGAAGTCTCTTAAGTCCATTCACTGTTCTTGATGTGAGTTTGTTTGCCCTCCTTGGAGCCGCATCCTTCCTTGGTGGCACCATGAGAATGACTGTTTCTCTCTGTGTCATACTTCTTGAACTCACCAATAACCTGTTGATGCTCCCATTGGTCATGCTGGTTCTCCTTATTTCAAAGTCTGTGGCTGATTGTTTAAATAAAGGTGTGTATGATCAGATTGTGGAAATGAAGGGGCTACCATACATGGAAGCACATGCAAAATCATACATGAGACAATTGGTTGCAAGTGATGTTGTATCTGGTCCCTTGATTACATTTTCTGGGATTGAAAAAGTGGGGAATGTTGTGCATGCATTAAAGGTCACGCGACATAATGGGTTTCCTGTGATTGATGAGCCTCCTTTCTCAGAAGCTCCCGAGTTGTGTGGGCTGGTTTTGAGGTACCATCTGTTGGTACTTCTTAAACACAAGACATTTACAAAGCAAAAGATTGGGTCCTTCATGGTGAACAAGTTCAAGGCACATGATTTTGCAAAGCCAGGTTCGGGCAAGGGGATCAAGCTAGATGACTTGGACATTTCTCAGGAGGAGATGGAAATGTATGTTGATCTCCATCATATTACTAATAGGTCACCATATACAGTTGTGGAAACAATGTCCTTAGCTAAAGCTGCTCTTCTTTTCCGCGAGCTTGGCCTCAGGCACTTGTTGGTGGTGCCAAAGACACCGGGAAGGCCTCCAATTGTGGGGATCCTGACAAGGCATGACTTCATGCCCGAGCATATATTGGGACTATACCCTCACTCCAACCCCCTCAAATGACAAGTAGGGGAGTCATTATTATCAAGTAGATAGATACTTTGGTGGCATCAAACCCTGCAGACAACCGTCAACTATGAAATATATATATATAATTGAAATTTCTATAGTAGAATCNCCTTGTAGTTCTAGGAAATGTGACAAAGTGACACGATACTCGGATACAACTTACATTTATTTTCTTTTCCTTTTTCCTCGAAACTTGTATTTTGTTTGATTTTGTTTCTTCTTATCTCTTGTAATTGTAATTGTAGGTTAGAACCTTGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	91676	96755	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002301.1	PF00654.15	Voltage_CLC	152	567	8.60E-89
Glyur000030s00002301.1	PF00571.23	CBS	599	658	0.00024
Glyur000030s00002301.1	PF00571.23	CBS	713	761	8.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.511
SRR1811619	moderate drought stress	0.535

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.793
DRR006520	Root Summer glycyrrhizin high producing strain	2.822
DRR006521	Root Winter glycyrrhizin high producing strain	2.304
DRR006522	Root Winter glycyrrhizin high producing strain	2.153
DRR006523	Root Summer glycyrrhizin low producing strain	3.353
DRR006524	Root Summer glycyrrhizin low producing strain	3.394
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.947
SRR2868004	Drought Stress (root)	3.686
SRR2967015	Control (root)	4.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.903
SRR9715740	Leaf	0.886
SRR9715741	Leaf	0.322
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.020

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.461
SRR8749028	MeJA induced 9h	0.361
SRR8749029	MeJA induced 9h	0.203
SRR8749030	Uninduced	0.838
SRR8749031	Uninduced	0.714
SRR8749032	Uninduced	0.514

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.007
SRR8400027	Control - Root	0.007