Gene detail information of Glyur000030s00002294 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G57770.1 | 0 | FAD/NAD(P)-binding oxidoreductase family protein |
| NR | XP_003529702.1 | 0 | PREDICTED: prolycopene isomerase, chloroplastic-like [Glycine max] |
| COG | YP_007143011.1 | 0 | monooxygenase FAD-binding protein [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q2VEX9|CRTSO_DAUCA | 1.00E-59 | Prolycopene isomerase, chloroplastic (Precursor) |
| trEMBL | tr|I1KNT0|I1KNT0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G40340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 64700 | 68965 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002294.1 | PF13450.1 | NAD_binding_8 | 85 | 146 | 3.90E-15 |
| Glyur000030s00002294.2 | PF13450.1 | NAD_binding_8 | 85 | 146 | 2.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.017 |
| SRR1783600 | control | 3.913 |
| SRR1783602 | moderate drought stress | 6.841 |
| SRR1811619 | moderate drought stress | 7.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.867 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.378 |
| SRR2868004 | Drought Stress (root) | 12.533 |
| SRR2967015 | Control (root) | 15.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.107 |
| SRR9715740 | Leaf | 104.877 |
| SRR9715741 | Leaf | 62.793 |
| SRR9715739 | Root | 7.775 |
| SRR9715742 | Root | 10.489 |
| SRR9715743 | Root | 8.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.009 |
| SRR8749028 | MeJA induced 9h | 0.697 |
| SRR8749029 | MeJA induced 9h | 0.279 |
| SRR8749030 | Uninduced | 0.593 |
| SRR8749031 | Uninduced | 0.028 |
| SRR8749032 | Uninduced | 0.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.556 |
| SRR8400027 | Control - Root | 17.843 |