Gene detail information of Glyur000030s00002289 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09794.1 | 6.00E-17 | Cox19 family protein (CHCH motif) |
| NR | KEH32768.1 | 2.53E-36 | Cox19 family protein (CHCH motif) [Medicago truncatula] |
| trEMBL | tr|A0A072UUM7|A0A072UUM7_MEDTR | 9.00E-37 | Cox19 family protein (CHCH motif) {ECO:0000313|EMBL:KEH32768.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 27166 | 30804 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002289.1 | PF08991.5 | DUF1903 | 6 | 57 | 2.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.397 |
| SRR1783600 | control | 14.360 |
| SRR1783602 | moderate drought stress | 12.841 |
| SRR1811619 | moderate drought stress | 12.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.931 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.769 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.390 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.827 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.577 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.051 |
| SRR2868004 | Drought Stress (root) | 20.025 |
| SRR2967015 | Control (root) | 19.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.911 |
| SRR9715740 | Leaf | 13.404 |
| SRR9715741 | Leaf | 14.243 |
| SRR9715739 | Root | 1.969 |
| SRR9715742 | Root | 6.537 |
| SRR9715743 | Root | 4.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.660 |
| SRR8749028 | MeJA induced 9h | 27.303 |
| SRR8749029 | MeJA induced 9h | 34.763 |
| SRR8749030 | Uninduced | 50.744 |
| SRR8749031 | Uninduced | 82.249 |
| SRR8749032 | Uninduced | 55.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.962 |
| SRR8400027 | Control - Root | 18.043 |