Gene detail information of Glyur000029s00003671 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42840.1 | 1.00E-29 | protodermal factor 1 |
| NR | XP_007146358.1 | 1.07E-117 | hypothetical protein PHAVU_006G033900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9S728|PDF1_ARATH | 8.00E-56 | Protodermal factor 1 (Precursor) |
| trEMBL | tr|V7BK69|V7BK69_PHAVU | 4.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW18352.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 532958 | 534637 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.842 |
| SRR1783600 | control | 5.785 |
| SRR1783602 | moderate drought stress | 1.604 |
| SRR1811619 | moderate drought stress | 1.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.227 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.216 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.267 |
| SRR9715740 | Leaf | 0.237 |
| SRR9715741 | Leaf | 4.362 |
| SRR9715739 | Root | 0.916 |
| SRR9715742 | Root | 9.569 |
| SRR9715743 | Root | 7.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.577 |
| SRR8400027 | Control - Root | 6.732 |