Gene detail

Gene detail information of Glyur000029s00003668.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58790.1	1.00E-174	galacturonosyltransferase 15
NR	XP_003532100.1	0	PREDICTED: probable galacturonosyltransferase 15-like [Glycine max]
COG	YP_002770215.1	5.00E-10	hypothetical protein BBR47_07340 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q8L4B0\|GAUTF_ARATH	0	Probable galacturonosyltransferase 15
trEMBL	tr\|I1KY25\|I1KY25_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G42280.1}

Sequence

Transcript Sequence

>Glyur000029s00003668.1
ATTATTATTAAAAAGTATAAAAAAAATATTTCCTTCTCTCTCTCTATATTCTTGGGAATATTGATTTCACGGTGAAGGTAAGAAAAACACAACAAAGAAAAAAAAAATTGGAAAAATTCGAGACCCGTGAACCTTTTTTTTTTTTGCTGCTACAAATGCGATTTCTCTTACTCTCTTTTCTCTCCAGTGAACACAACAACAACACAATTCTCTCTTTCAGTCTTTGGCACTGAAACAGTGAAGAATCAGTTAGGCAATGAANCTTCAGATCTCGTGCTGATTCGATCGGAAGAAGGAAGAGAAATAGAGAGGAGTTGGAGTGATTCATGGAATCGAGGAGATGAAGTTCTACATATCTGCGAAAGGAATAAAGAGAGTCACGATACCGAACGGCGCCGGTGCCGGAAAAGGATCGGCAAAGGGTACGACGACGACGACGGCTGCGGCTACAACTGCCGCCGCATCCTCCGGTCGCCGGATTTCCCTCCGGACGGTGCTTCCGGTGGTGTTGGTACTCGGGATCGTGTTACCGTTTCTCTTCGTGAGGATCGCGATCTTGGTGCTCGAATCAGCTACTCTCTGCTCCTCGTTGGAGTGTGCTGAGTGGAGGTTTTTTAGTGGGGCTGACACGTCACTGAAACTCAGAGATGAGCTGACCAGAGCGCTAATGGAGGCAAATGATGGTAATGTTAATGAAGGAGCAGGGTCATTCAATGAACTTGTGAAAGAGATGACCTCAAAACAAGACCTTAAGGCTTTTGCTTTCAAGANCAAAGGCATGCTATCACAGATGGAACGAAAGGTGCAGTCAGCAAGACAGCAGGAGTCAGTTTATTGGCATCTAGCTTCACATGGTGTTCCCAAAAGTCTACATTGTCTTTGTCTAAAGTTGGCTGAAGAATATGCTGTAAATGCCATGGCTCGATCTCGTCTACCCCCTCCTGAATTTGTGTCTCGCCTTAGTGACCCGACCTTTCACCACCTAGTTCTCCTAACTGACAATGTCCTTGCTGCCTCTGTTGTTGTAACCTCTACAGTTGAAAGTTCAGTCAACCCCGAAAAATTAGTTTTTCATATTGTTACCGACAAGAAAACTTATGCTCCAATGCATGCTTGGTTTGCCACCAATTCTATTAAATCAGCTGTTGTGGAAGTTAGGGGATTACACCAATATGATTGGTCTGAAGAAGTGAATGCTGGTGTTAAAGAGATGCTGGAAACTAATCACTTAATTTGGAAGCACTACTATAATAAAGAAAAGAACCTNGACTACAGTCAAGAGGATAACAGATATTTGGATGCTTTAAGGCCCAGCAGCATTTCCTTGATGAATCAACTCCGCATTTATTTGCCTGAGCTGTTTCCGGATCTCAAAAAGATAGTATTCTTGGATGATGATGTTGTAGTACAACATGACATATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCAGTGGTTCAGTATTCAAGTCATGGTGTGGAGACAACTGCTGCCCTGGAAGTAANTACATGAACTACTTGAACTTTTCACATCCTCTCATATCATCGAATTTTGACGGNGAGCAGTGTGGATGGCTCTATGGAATGAATATATTTGATCTTGAAGCTTGGAGGAAAACAAACATAACAGAGAACTACCGTCAATGGTTGAAACTTAACCTNAAGTCTGGGACGGAATTGTGGAATCCGGGAGTGCTTCCACCTGCCTTGATTGCATTTGACGGTCAAGTGCATCCTATAGATTCATCAATGCTTGTGACTAATTTAGGTTATCGCTATCAATCAGAAGAAATTAGCAAAGAAAGATTAGAAGCTNCTGCTGTTATCCATTTCAGTGGCCCTGCAAAGCCGTGGCTTGAAATTGGTTACCCAGAGTTTCGAAGTTTATGGAGTAGATATGTAAATTCCTCTAATAAGTTTATTAGGAGATGTAGAATTACAGGGTGAAGGAACAAAGTTCTTCCACCTCCAATATTTATTGAGATTCAACCAGTGACACCGTATGGGATTAGAGGGAAGAAGGTTCTGCCTTCAGTCTCTGACCCATACTCTGTATGAGATCAGTTACGCCATGTTCATATAAATAGTAAATAGATGAAGCTGCCACGCAACACCCTACTAGAGCGGTATCTGCTCTTAAGAAAGGTATAAGCATCATTGATCTAGCCCTCTGATAATACTGTAAATTTTTTTCCATCAAAATTACATTTTGAAATGGAGAAATTGTTTTGCATGATTTGAAATTTCAGTTAGACGGTNCTCAAGTTTTGTTGCATAAAACTCGGTAAATCACTTACCAAGCAGCCTGAGAGTTCAATCTTTTGCTCTTGGAAGTACTATAGTTGGAGCCAGCCAACTTAGTCTGTGTATCACTGTTGCTCNACTATCTTAAACTTGTTATTTTTGTACTTTGTGTATGTGGAGCTAATAATAATAATAATAATACAGGAAAATGTGAAAAGGTCTAACAACTGTAATTCTGTACAGATGTGACTGATGTAAAATCAAAAGCGAAGTTGAACTATCACCACTCATTTGAAAGTCGCTTTCATGCTATTCTCCCTCTTATAGCTGTTCAGGGTTGGCTGACTAAAGAATAATATCTCGGTTAGCTCTTTCATTTTATGCTGTGAAATTCTGCCATTTGATGTGTTTCATGGAATCTATCCTCGTGTGGTTGATCACAATGAATGAAGTGGCTCTGGAATCTAATCATGCTGAAGAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	507935	516141	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003668.1	PF01501.15	Glyco_transf_8	180	509	1.10E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.980
SRR1783600	control	17.119
SRR1783602	moderate drought stress	17.034
SRR1811619	moderate drought stress	16.842

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.619
DRR006520	Root Summer glycyrrhizin high producing strain	16.349
DRR006521	Root Winter glycyrrhizin high producing strain	16.912
DRR006522	Root Winter glycyrrhizin high producing strain	16.459
DRR006523	Root Summer glycyrrhizin low producing strain	45.309
DRR006524	Root Summer glycyrrhizin low producing strain	45.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.866
SRR2868004	Drought Stress (root)	19.357
SRR2967015	Control (root)	18.158

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.977
SRR9715740	Leaf	19.151
SRR9715741	Leaf	30.545
SRR9715739	Root	5.718
SRR9715742	Root	17.266
SRR9715743	Root	14.127

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.880
SRR8749028	MeJA induced 9h	18.757
SRR8749029	MeJA induced 9h	12.093
SRR8749030	Uninduced	9.875
SRR8749031	Uninduced	0.898
SRR8749032	Uninduced	2.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.855
SRR8400027	Control - Root	21.230