Gene detail information of Glyur000029s00003660 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42820.1 | 4.00E-44 | HVA22-like protein F |
| NR | KEH33770.1 | 2.76E-83 | TB2/DP1, HVA22 family protein [Medicago truncatula] |
| Swissprot | tr|Q682H0|HA22F_ARATH | 2.00E-63 | HVA22-like protein f |
| trEMBL | tr|A0A072V6I0|A0A072V6I0_MEDTR | 1.00E-83 | TB2/DP1, HVA22 family protein {ECO:0000313|EMBL:KEH33770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 463621 | 464309 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003660.1 | PF03134.14 | TB2_DP1_HVA22 | 2 | 72 | 4.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.333 |
| SRR1783600 | control | 0.279 |
| SRR1783602 | moderate drought stress | 0.440 |
| SRR1811619 | moderate drought stress | 0.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.437 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.646 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.758 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.962 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.329 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.649 |
| SRR2868004 | Drought Stress (root) | 9.408 |
| SRR2967015 | Control (root) | 8.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.170 |
| SRR9715740 | Leaf | 0.146 |
| SRR9715741 | Leaf | 1.000 |
| SRR9715739 | Root | 0.773 |
| SRR9715742 | Root | 2.754 |
| SRR9715743 | Root | 2.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.624 |
| SRR8749028 | MeJA induced 9h | 0.794 |
| SRR8749029 | MeJA induced 9h | 0.852 |
| SRR8749030 | Uninduced | 0.350 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.467 |
| SRR8400027 | Control - Root | 3.736 |