Gene detail

Gene detail information of Glyur000029s00003649.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42810.2	0	protein phosphatase 5.2
NR	XP_004499994.1	0	PREDICTED: serine/threonine-protein phosphatase 5-like isoform X1 [Cicer arietinum]
COG	NP_618150.1	1.00E-33	serine/threonine specific protein phosphatase [Methanosarcina acetivorans C2A]
Swissprot	tr\|Q84K11\|PPP5_SOLLC	0	Serine/threonine-protein phosphatase 5
trEMBL	tr\|K7LA10\|K7LA10_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G42380.2}

Sequence

Transcript Sequence

>Glyur000029s00003649.1
GTGTGTCTCATAAGTCATAAAATCCCCTCACTATTATTCCAGCCTCCAGCGGCCAACCCGGTGAAACTCCCTACTCGTCAATCATTGCGAGGAAAAGATTGATTCTGTTAAGTTCTGAATTTCTTCACCATATACAACAAAAGCTTCGACTGAAATGGAAACTGAAGAGAATGTTTCAAAGGCTGAAGAACTTAAGGTCCTTGCTAATGATGCATTCAAGGCTCGCAAATATTCCCAAGCTATTGATCTATACACACAAGCAATTGAGCTAAACAGTCGAAATGCAGTTTACTTTGCTAATCGTGCCTTTGCCCATCTTCGGCTGGAGGAATATGGTAGTGCAATACNTGATGCCACAAAAGCTATCGAAGGTTATTACAGGCGAGGTGCTGCTCATCTTGGTCTGGGAAAATTCAAGGATGCACTNAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAACGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAGCTTAAATTTGAAGAAGCAATTTCTGTACCAGAGTCTGAAAGGCGTTCAATAGCTGAGTCCATCGATTTCCACACAATAGGAAAGGGCCGCAATTCTTCGGTACGAACCGAAGGGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGCTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGCTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTGGCCGCAATACTGATGTCGAGTCAACATATTCAGGAGCAAGAATAGAAGGGGATGTTGTTACTTTGGATTTTGTAAAGAAAATGATGGATGATTTCAAGAATCAGAAGTGCTTGCATAAGCGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGATATAACTGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTTTTAAATATTTTTGAGCTCAATGGGCTTCCTTCAGAAGAGAATCCNTATCTATTTAATGGTGACTTTGTGGATAGAGGATCATTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAAGTGCGCTCGAAATTGAATGATACGTTTGTTGAACTATTTGCGGAAGTATTCTGCTATTTACCTTTGGCTCATGTGATAAATAAGAAAATTTTCGTAGTCCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATCGGTTTTGTGAGCCTCCCGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTCCCAGGAAGAGGCCCCAGCAAGCGTGGTGTAGGCCTTTCTTTCGGTGCAGATGTNACAAAAAGGTTCTTGCAGGAAAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTCGAAGCGCNCGATTTGAAACCTAACATTGTTACATTCTCAGCAGTGCCACACCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCTTAATTTATACTAAGCTGACTAGAACTGCCAATTGTTGGTGCTGCTTTGCTAAATCTATGCCCTAAGGGCAACATTCAGAAGGTGGATNGAGAAACATCTGATACATGTTGATCACTGTTGTTATGTATAATATTTTTGGCTTAACATTTCATTAAGATTTATTTTTTTACCCCCTCCAAATGTTGCCACTTTCTTTTGTACTTTTTTTGTCATTTGGTAAACAAGTGTAATGAAACCTGCATGATCTTCATTAGGTTCGTGAAACAACAGTGATTAAGGTTTTACTTGAAACTGGTTACATGAATGGCTATGGTAGATGTAAGACCATTTAATTGTGTTTGAGCTAGTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	404285	412725	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04460	PPP5C	EC:3.1.3.16	MAPK signaling pathway	map04010

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

cellular_component

GO:0005634 nucleus

GO:0005737 cytoplasm

molecular_function

GO:0004721 phosphoprotein phosphatase activity

GO:0005515 protein binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003649.1	PF13414.1	TPR_11	9	72	1.20E-16
Glyur000029s00003649.1	PF08321.7	PPP5	110	179	2.20E-08
Glyur000029s00003649.1	PF08321.7	PPP5	203	263	1.20E-20
Glyur000029s00003649.1	PF00149.23	Metallophos	270	464	1.10E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.923
SRR1783600	control	21.103
SRR1783602	moderate drought stress	20.846
SRR1811619	moderate drought stress	20.791

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.945
DRR006520	Root Summer glycyrrhizin high producing strain	26.925
DRR006521	Root Winter glycyrrhizin high producing strain	30.515
DRR006522	Root Winter glycyrrhizin high producing strain	29.766
DRR006523	Root Summer glycyrrhizin low producing strain	25.632
DRR006524	Root Summer glycyrrhizin low producing strain	25.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.203

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.037
SRR2868004	Drought Stress (root)	49.391
SRR2967015	Control (root)	44.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.664
SRR9715740	Leaf	29.834
SRR9715741	Leaf	28.986
SRR9715739	Root	7.073
SRR9715742	Root	18.742
SRR9715743	Root	16.380

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.264
SRR8749028	MeJA induced 9h	44.664
SRR8749029	MeJA induced 9h	38.541
SRR8749030	Uninduced	32.516
SRR8749031	Uninduced	28.815
SRR8749032	Uninduced	20.367

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.777
SRR8400027	Control - Root	39.517