Gene detail information of Glyur000029s00003648 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04865.1 | 0 | Aminotransferase-like, plant mobile domain family protein |
| NR | XP_007146378.1 | 0 | hypothetical protein PHAVU_006G035400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LNG5|PPP7L_ARATH | 5.00E-70 | Serine/threonine-protein phosphatase 7 long form homolog |
| trEMBL | tr|V7BK89|V7BK89_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW18372.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 397604 | 403075 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003648.1 | PF10536.4 | PMD | 67 | 417 | 1.90E-97 |
| Glyur000029s00003648.2 | PF10536.4 | PMD | 67 | 417 | 1.90E-97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.666 |
| SRR1783600 | control | 5.716 |
| SRR1783602 | moderate drought stress | 7.154 |
| SRR1811619 | moderate drought stress | 7.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.341 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.621 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.044 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.773 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.331 |
| SRR2868004 | Drought Stress (root) | 20.141 |
| SRR2967015 | Control (root) | 20.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.507 |
| SRR9715740 | Leaf | 15.632 |
| SRR9715741 | Leaf | 15.382 |
| SRR9715739 | Root | 0.985 |
| SRR9715742 | Root | 5.824 |
| SRR9715743 | Root | 4.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.879 |
| SRR8749028 | MeJA induced 9h | 20.930 |
| SRR8749029 | MeJA induced 9h | 9.983 |
| SRR8749030 | Uninduced | 9.123 |
| SRR8749031 | Uninduced | 8.083 |
| SRR8749032 | Uninduced | 6.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.283 |
| SRR8400027 | Control - Root | 14.662 |