Gene detail

Gene detail information of Glyur000029s00003645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25660.1	2.00E-138	Amidase family protein
NR	XP_004500003.1	0	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum]
COG	YP_007111316.1	3.00E-105	aspartyl/glutamyl-tRNA amidotransferase subunit A [Geitlerinema sp. PCC 7407]
Swissprot	tr\|E0CTY1\|GATA_VITVI	5.00E-173	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03150} (Precursor)
trEMBL	tr\|G7IZY8\|G7IZY8_MEDTR	0	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03150}

Sequence

Transcript Sequence

>Glyur000029s00003645.1
TCTCTCACCCACCAATCTTTTTTTTTTACTACAACCTCACTGCCGCAATCCCAAATCCTCTCCAATCGTTTTTTTTTTCTCACGCGCCAACTCTCCGCCGCCGACCTCGTCCGCTCCCACCTCACGCGCCTCCGCCTCACCGAGCCCCATCTCCGCTCCTTCCTCCACCTTTTTTTTTTTAACACCCTCCTCGCCCACGCCCATGACCTCGACCGCAGAATTTTTTTTTTTGAGGACCCCGGCCCCCTCGCCGGTGTGCTCGTCGCCGTCAAGGACAACATCTGCACCGCAGACATGCCCTCCACCGGTGGCTCCCGCATCCTGGAGGGATACCGGCCGCCCTTCGACGCCACCGCCGTGAAGAGAGTAAGGGATTTTTTTTTTATTGTTGTTGGCAAAACCAATATGGATGAGTTCGGAATGGCAGCTGCAGTTTCTGCTAGGCAGTGTGTCGTATCGTTTTTTTTTTACACCGGTGGAAGTGTGAGGCAGCCAGCATCTTTCTGTGGTGTCGTAGGTTTGAAGCCGACTTATGGACGTGTCTCAAGATTTGGACTTATGTTTTTTTTTTCATCACTTGATGCCATTGGCTGCTTTGGTTCCTCGGTTGCTTTTTTTTTTTTTCTCCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACCTCAAGTCAGCAGGTGCCCAACTTTCTATCTCATTTTGACTCTGCAAGTTCTTTTTTTTTTAAGCCCTTGAAGGGACTGAGAGTTGGTTTGATCCGTGAAACTTTTTTTTTTGGTGTTGATGCTGAAGTAGTTTCTGCAATTCGTGCTGCTGCTTTACATTTTGAGGAATTAGGGTGCTCCGTGAACGAGACTCTCTCTATGGAGATTCCCGAGCCAAAGGGCTTGGTTCTGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAGAGAGCACAGCAGGTGAGAACCATAATAAGGAATAGCTTTAAGGAGGCGCTGAATCAAAATGACATCCTTTTTTTTTTTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTTTTTTTTTTTTGACTGTAAATGTTAACCTAGCAGGACTACCTGCCTTGGTTTTACCTTGTGGATTTATGGGGGGTGGACCTGCAGGTCTTCCCGTTGGCTTGCAAATGATTGGTGCAGCATTTGATGAGAGGGAGACGATTGGTGCTGACTTGAGTGGTGAGCTTGAGCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	379537	384338	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02433	gatA, QRSL1	EC:6.3.5.6 6.3.5.7	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003645.1	PF01425.16	Amidase	35	142	1.60E-24
Glyur000029s00003645.1	PF01425.16	Amidase	140	285	6.60E-33
Glyur000029s00003645.1	PF01425.16	Amidase	299	411	6.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.348
SRR1783600	control	2.146
SRR1783602	moderate drought stress	2.209
SRR1811619	moderate drought stress	2.116

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.016
DRR006520	Root Summer glycyrrhizin high producing strain	2.434
DRR006521	Root Winter glycyrrhizin high producing strain	1.595
DRR006522	Root Winter glycyrrhizin high producing strain	2.271
DRR006523	Root Summer glycyrrhizin low producing strain	2.125
DRR006524	Root Summer glycyrrhizin low producing strain	3.104
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.621
SRR2868004	Drought Stress (root)	0.486
SRR2967015	Control (root)	0.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.528
SRR9715740	Leaf	4.374
SRR9715741	Leaf	3.118
SRR9715739	Root	0.806
SRR9715742	Root	0.920
SRR9715743	Root	0.619

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	0.154
SRR8749029	MeJA induced 9h	0.184
SRR8749030	Uninduced	0.025
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.456
SRR8400027	Control - Root	1.139