Gene detail

Gene detail information of Glyur000029s00003643.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19070.1	1.00E-85	spermidine hydroxycinnamoyl transferase
NR	XP_003599037.1	0	Anthranilate N-benzoyltransferase protein [Medicago truncatula]
Swissprot	tr\|O64470\|SHT_ARATH	1.00E-101	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|G7J1R6\|G7J1R6_MEDTR	0	Spermidine hydroxycinnamoyl transferase {ECO:0000313\|EMBL:AES69288.1}

Sequence

Transcript Sequence

>Glyur000029s00003643.3
ATGGCCTTCTCCACATTGCATCNTGAGTCAACGCCACAGGGTCGTCTATGGCTGTCCGATGTGGACCAAGTCGTGCGTCTCCGCCACACACCACTCATCTACATCTACAAACCAGAACACAACCACGATGCCACGGAGAGGATGAGGAACTCCCTCGGCAAGATCCTAGTTCACTACTACCCCATGGCTGGTCGATTGTGCTGGACAGAAGAAAGAGGCCGAATAGAATTGGAACTCAATTCCAAGGGAGCGACGATATTGCTTGAAGCAGAAACCACAAAAACAATGGCTGATTATGGAGATTTCGCACCCTCTGACTCCACCAAGGAACTCGTTCCAACAATCGATTACACTCAACCTATGGAGGAAGTTCCTTTGTTTGTTGTGCAACTCACGAGGTTCCACGGCAACGAGGGAATCGCCGTTGGGGTTGCTTTCTCCCACCCTTTATCTGATGGGATCGGTTGCATTCGTTTCATCAACTCATGGNCCAACATAGCACGTGGAGGCCCACTAGAGGCCCACGAATCCCCCTTCCTGGATCGAACGATGNTGAAATTCTCACACCCCCCATTGCCACCACGCTTCGACCCCCCAGAATTGAAGCCTCTCCCACTCATTCTCGGAAGATCCGACACCACTGCTGAAAGAAACAAGAAGACAACCGCTACACTGTTAAAGCTCACAGCAGAGCAAGTTGAGAAGCTGAAGAATAAGGCCAACGAAAACGACACTCGAAAAGGGTTGAGACCTTATAGCAGGTACGAAGCAATTGCGGCACATATATGGAGGTGTGCATCAAAGGCTCGTGAGCTCGATGAGAACCATCCGAGTGTTGTAAGGTTCAACGTTGAATTCCGGAACAGAATGATTCCACCTCTGCCTCGGAACTATTTTGGGAATGCTCTGGCACAAACAGCGGCAAAAGTTTTAACCAGCAGCTGTATATATAAGTTTGTTCTTCCTCACTCTTTTCATTCGATCATTTTCCTCTTCACTCTTAATAAAAGGTTACATTGGAGAAATCACGTCAAGACCATTGAGTCATGGGCACAGAAGGTGAGGGAGGCAATAGAGGTGGTGAATGATGAGTATATAAGGTCGCAGATTGATGTGATTCGGGGTCAGGAGCATTTGGACTGTGCACGGGCTTTGTTTTTGGGAGGGGAAGGGAAGAATGCTACATTTTTTCATCTCACGAGCTGGATGAGTTTGCCTGCATATGAAGCTGATTTTGGGTGGGGGAAGCCTGTGTATTTTGGGTTAGGATATGTCTCTTCACATGACAGGGGATTGATTCTGTTGAGCCCTGATGGAGATGGCTCTGTTGTTGTGTGTATGCACTTCCAGGTAGCACATATGCAGCTCTTCAAGAAGTTTTTCTACGAGGATNTATATGAAATGTGTACACCATCATCACGACTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	354556	361977	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13065	E2.3.1.133, HCT	EC:2.3.1.133	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941
			Flavonoid biosynthesis	map00941
			Flavonoid biosynthesis	map00941
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003643.3	PF02458.10	Transferase	9	309	6.30E-65
Glyur000029s00003643.3	PF02458.10	Transferase	343	462	6.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.111
SRR1783600	control	4.043
SRR1783602	moderate drought stress	6.045
SRR1811619	moderate drought stress	6.144

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.264
DRR006520	Root Summer glycyrrhizin high producing strain	5.043
DRR006521	Root Winter glycyrrhizin high producing strain	3.442
DRR006522	Root Winter glycyrrhizin high producing strain	3.303
DRR006523	Root Summer glycyrrhizin low producing strain	9.053
DRR006524	Root Summer glycyrrhizin low producing strain	8.944
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.119
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.312
SRR2868004	Drought Stress (root)	4.555
SRR2967015	Control (root)	3.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.123
SRR9715740	Leaf	139.256
SRR9715741	Leaf	28.109
SRR9715739	Root	1.174
SRR9715742	Root	0.965
SRR9715743	Root	0.755

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.666
SRR8749028	MeJA induced 9h	3.619
SRR8749029	MeJA induced 9h	1.559
SRR8749030	Uninduced	3.428
SRR8749031	Uninduced	1.940
SRR8749032	Uninduced	2.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.276
SRR8400027	Control - Root	3.320